miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30593 3' -51.9 NC_006549.1 + 52311 0.66 0.983653
Target:  5'- uUGGCG--GCGUGCGCauGGCCccucUUAGAu -3'
miRNA:   3'- -ACUGCuuCGCAUGCG--CCGGa---AAUCUc -5'
30593 3' -51.9 NC_006549.1 + 137642 0.66 0.981629
Target:  5'- aGACGAAGgGUAUcCGGCCa------ -3'
miRNA:   3'- aCUGCUUCgCAUGcGCCGGaaaucuc -5'
30593 3' -51.9 NC_006549.1 + 135730 0.67 0.974433
Target:  5'- gGACGAAGCucuCG-GGCCgucgGGAGa -3'
miRNA:   3'- aCUGCUUCGcauGCgCCGGaaa-UCUC- -5'
30593 3' -51.9 NC_006549.1 + 53454 0.69 0.925421
Target:  5'- aGACG-AGCGg--GCGGCCga-AGAGa -3'
miRNA:   3'- aCUGCuUCGCaugCGCCGGaaaUCUC- -5'
30593 3' -51.9 NC_006549.1 + 52727 0.7 0.894395
Target:  5'- cGGCGGAGC--GCGCGGCCa------ -3'
miRNA:   3'- aCUGCUUCGcaUGCGCCGGaaaucuc -5'
30593 3' -51.9 NC_006549.1 + 55963 0.71 0.857272
Target:  5'- cGGUGucuGGC-UGCGCGGCCUUUAGGu -3'
miRNA:   3'- aCUGCu--UCGcAUGCGCCGGAAAUCUc -5'
30593 3' -51.9 NC_006549.1 + 92145 0.72 0.81473
Target:  5'- cGACGccauAGCGUGCGgGGCCUa----- -3'
miRNA:   3'- aCUGCu---UCGCAUGCgCCGGAaaucuc -5'
30593 3' -51.9 NC_006549.1 + 122898 0.72 0.796412
Target:  5'- cGAgGAAGCGUcCGUGGCCUUcUGGc- -3'
miRNA:   3'- aCUgCUUCGCAuGCGCCGGAA-AUCuc -5'
30593 3' -51.9 NC_006549.1 + 123590 0.73 0.777459
Target:  5'- cGAgGAAGCGUcCGUGGCCUUcUGGu- -3'
miRNA:   3'- aCUgCUUCGCAuGCGCCGGAA-AUCuc -5'
30593 3' -51.9 NC_006549.1 + 123296 0.73 0.777459
Target:  5'- cGAgGAAGCGUcCGUGGCCUUcUGGu- -3'
miRNA:   3'- aCUgCUUCGCAuGCGCCGGAA-AUCuc -5'
30593 3' -51.9 NC_006549.1 + 123129 0.73 0.777459
Target:  5'- cGAgGAAGCGUcCGUGGCCUUcUGGu- -3'
miRNA:   3'- aCUgCUUCGCAuGCGCCGGAA-AUCuc -5'
30593 3' -51.9 NC_006549.1 + 122961 0.73 0.777459
Target:  5'- cGAgGAAGCGUcCGUGGCCUUcUGGu- -3'
miRNA:   3'- aCUgCUUCGCAuGCGCCGGAA-AUCuc -5'
30593 3' -51.9 NC_006549.1 + 122730 0.73 0.777459
Target:  5'- cGAgGAAGCGUcCGUGGCCUUcUGGu- -3'
miRNA:   3'- aCUgCUUCGCAuGCGCCGGAA-AUCuc -5'
30593 3' -51.9 NC_006549.1 + 122646 0.73 0.777459
Target:  5'- cGAgGAAGCGUcCGUGGCCUUcUGGu- -3'
miRNA:   3'- aCUgCUUCGCAuGCGCCGGAA-AUCuc -5'
30593 3' -51.9 NC_006549.1 + 52705 0.73 0.75795
Target:  5'- gGGCGAuccgucAGCGUugGCGGCUUgcgcccaGGAGc -3'
miRNA:   3'- aCUGCU------UCGCAugCGCCGGAaa-----UCUC- -5'
30593 3' -51.9 NC_006549.1 + 123191 0.73 0.737965
Target:  5'- cGAgGAAGCGUcCGUGGCCUUcUGGcAGc -3'
miRNA:   3'- aCUgCUUCGCAuGCGCCGGAA-AUC-UC- -5'
30593 3' -51.9 NC_006549.1 + 107443 0.76 0.602012
Target:  5'- cGACuuugcGAGCGUACGCuGGCCguccgUAGAGg -3'
miRNA:   3'- aCUGc----UUCGCAUGCG-CCGGaa---AUCUC- -5'
30593 3' -51.9 NC_006549.1 + 46024 1.1 0.005641
Target:  5'- gUGACGAAGCGUACGCGGCCUUUAGAGa -3'
miRNA:   3'- -ACUGCUUCGCAUGCGCCGGAAAUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.