miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30594 3' -60.3 NC_006549.1 + 41010 0.66 0.726619
Target:  5'- aGGUCCgauagGCCCCCagg--GAUCCcuGGGGg -3'
miRNA:   3'- -CCGGGa----CGGGGGguugaCUAGG--UCCU- -5'
30594 3' -60.3 NC_006549.1 + 51938 0.66 0.716922
Target:  5'- cGGCCCUGCCUUguaCGACaaGA-CCAGGc -3'
miRNA:   3'- -CCGGGACGGGGg--GUUGa-CUaGGUCCu -5'
30594 3' -60.3 NC_006549.1 + 41716 0.66 0.69437
Target:  5'- cGCCCgcggGCCCCCCGGCccccccggccccccUGggCCcgcgggcccagcAGGAg -3'
miRNA:   3'- cCGGGa---CGGGGGGUUG--------------ACuaGG------------UCCU- -5'
30594 3' -60.3 NC_006549.1 + 50454 0.66 0.69437
Target:  5'- gGGaCCCacugGCCCCgCCGgaccggcggggcccAUUGGUCCGGGc -3'
miRNA:   3'- -CC-GGGa---CGGGG-GGU--------------UGACUAGGUCCu -5'
30594 3' -60.3 NC_006549.1 + 50226 0.67 0.654579
Target:  5'- gGGCCCUuggacgccaggagcGCCCauaucUCCGAUUGGUCCccuuGGAc -3'
miRNA:   3'- -CCGGGA--------------CGGG-----GGGUUGACUAGGu---CCU- -5'
30594 3' -60.3 NC_006549.1 + 40889 0.67 0.637555
Target:  5'- aGCCUcgGCCCCCC---UGGUCCgaAGGGg -3'
miRNA:   3'- cCGGGa-CGGGGGGuugACUAGG--UCCU- -5'
30594 3' -60.3 NC_006549.1 + 100232 0.67 0.637555
Target:  5'- aGGUCCcguUGCCCUCUGGCUGGggaccucgggcUUCGGGGg -3'
miRNA:   3'- -CCGGG---ACGGGGGGUUGACU-----------AGGUCCU- -5'
30594 3' -60.3 NC_006549.1 + 113929 0.67 0.627533
Target:  5'- cGCCCUGCCCUCUAACaaauuugUgAGGAu -3'
miRNA:   3'- cCGGGACGGGGGGUUGacua---GgUCCU- -5'
30594 3' -60.3 NC_006549.1 + 102370 0.68 0.587549
Target:  5'- gGGCCCgUGUCUCCCAugUcacccuuuGAUCCucgcGGAc -3'
miRNA:   3'- -CCGGG-ACGGGGGGUugA--------CUAGGu---CCU- -5'
30594 3' -60.3 NC_006549.1 + 40593 0.7 0.472004
Target:  5'- aGGCCCccccggGCCCgCCGGCUua-CCAGGGa -3'
miRNA:   3'- -CCGGGa-----CGGGgGGUUGAcuaGGUCCU- -5'
30594 3' -60.3 NC_006549.1 + 7386 0.73 0.295826
Target:  5'- gGGCCCcaggGCCCgCCCGGCcc-UCCAGGGc -3'
miRNA:   3'- -CCGGGa---CGGG-GGGUUGacuAGGUCCU- -5'
30594 3' -60.3 NC_006549.1 + 50615 1.1 0.000851
Target:  5'- gGGCCCUGCCCCCCAACUGAUCCAGGAg -3'
miRNA:   3'- -CCGGGACGGGGGGUUGACUAGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.