Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30594 | 5' | -58.5 | NC_006549.1 | + | 50579 | 0.97 | 0.00947 |
Target: 5'- gAACCCUGaGGACCCGUUGGGCCAACCu -3' miRNA: 3'- -UUGGGAUcCCUGGGCAACCCGGUUGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 41412 | 0.84 | 0.078912 |
Target: 5'- gGACCCgcGGGcCCCGUUGGGCCAaaaggGCCc -3' miRNA: 3'- -UUGGGauCCCuGGGCAACCCGGU-----UGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 102556 | 0.8 | 0.155209 |
Target: 5'- cAGCCCUuuGGGCCCGcgGGGCCGGCg -3' miRNA: 3'- -UUGGGAucCCUGGGCaaCCCGGUUGg -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 41279 | 0.77 | 0.209443 |
Target: 5'- aGGCCCUcaAGGacuucccgGACCCGUUGGGCCcaaagGACCc -3' miRNA: 3'- -UUGGGA--UCC--------CUGGGCAACCCGG-----UUGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 49874 | 0.77 | 0.219934 |
Target: 5'- gGACCCUuGGGGCCCGg-GGGCCcaggggGGCCc -3' miRNA: 3'- -UUGGGAuCCCUGGGCaaCCCGG------UUGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 50982 | 0.76 | 0.260223 |
Target: 5'- cGGCCCUaAGGGGCCCaugGGGCCcuucgGGCCu -3' miRNA: 3'- -UUGGGA-UCCCUGGGcaaCCCGG-----UUGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 7728 | 0.76 | 0.266447 |
Target: 5'- -uCCCcAGGGGCCCaGggGGGCCGauggGCCg -3' miRNA: 3'- uuGGGaUCCCUGGG-CaaCCCGGU----UGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 50797 | 0.74 | 0.320604 |
Target: 5'- -gUCCUGGcGGGCCCGcUGGGCCuguugcGCCc -3' miRNA: 3'- uuGGGAUC-CCUGGGCaACCCGGu-----UGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 50373 | 0.74 | 0.342938 |
Target: 5'- uGGCCCgGGaGGACCCucUGGGCCGuCCg -3' miRNA: 3'- -UUGGGaUC-CCUGGGcaACCCGGUuGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 101929 | 0.72 | 0.416445 |
Target: 5'- cGCCCUGGaGACCCGg-GGGCCcugcaGGCCc -3' miRNA: 3'- uUGGGAUCcCUGGGCaaCCCGG-----UUGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 49739 | 0.72 | 0.434042 |
Target: 5'- uGACCCUGcgucccccGcGGGCCCGUgGGGCCcguuGGCCc -3' miRNA: 3'- -UUGGGAU--------C-CCUGGGCAaCCCGG----UUGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 49820 | 0.71 | 0.470484 |
Target: 5'- aGACCCUuuGGuCCCG-UGGGcCCAGCUg -3' miRNA: 3'- -UUGGGAucCCuGGGCaACCC-GGUUGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 50633 | 0.71 | 0.470484 |
Target: 5'- -cCCCUAGuGGuuCCCGcUGGGCCcuGCCc -3' miRNA: 3'- uuGGGAUC-CCu-GGGCaACCCGGu-UGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 41727 | 0.71 | 0.479838 |
Target: 5'- gGACCCaGGGGcGCCCGc-GGGCCccCCg -3' miRNA: 3'- -UUGGGaUCCC-UGGGCaaCCCGGuuGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 82544 | 0.71 | 0.489281 |
Target: 5'- gGACCCauGGGGCCCGUuggcUauucuacgcagaGGGCCAGCg -3' miRNA: 3'- -UUGGGauCCCUGGGCA----A------------CCCGGUUGg -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 6653 | 0.7 | 0.52787 |
Target: 5'- gGACCCgcuGGcGAUCCGgguccucccGGGCCGACUg -3' miRNA: 3'- -UUGGGau-CC-CUGGGCaa-------CCCGGUUGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 101855 | 0.7 | 0.547589 |
Target: 5'- gGACCCUGaGG-CCCGggaGGGCCuauagGACCg -3' miRNA: 3'- -UUGGGAUcCCuGGGCaa-CCCGG-----UUGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 7071 | 0.7 | 0.567535 |
Target: 5'- -uCCCaccGGACCCGccGGGCCcGCCg -3' miRNA: 3'- uuGGGaucCCUGGGCaaCCCGGuUGG- -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 51008 | 0.69 | 0.577578 |
Target: 5'- gGGCCCc-GGGGCCCcUUaGGGCCGAUn -3' miRNA: 3'- -UUGGGauCCCUGGGcAA-CCCGGUUGg -5' |
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30594 | 5' | -58.5 | NC_006549.1 | + | 6774 | 0.69 | 0.577578 |
Target: 5'- aAGCCCgguuaAGGGACCCGc-GGGUCcGCa -3' miRNA: 3'- -UUGGGa----UCCCUGGGCaaCCCGGuUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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