miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30596 3' -61.1 NC_006549.1 + 15833 0.66 0.706243
Target:  5'- aGGUGAGC-GCGgCGUCUugUUGCgGGCCu -3'
miRNA:   3'- gCCAUUUGcCGCgGCGGG--AGCG-CCGG- -5'
30596 3' -61.1 NC_006549.1 + 52736 0.66 0.686889
Target:  5'- aGGaacAAGCGGCGgaGCg--CGCGGCCa -3'
miRNA:   3'- gCCa--UUUGCCGCggCGggaGCGCCGG- -5'
30596 3' -61.1 NC_006549.1 + 106323 0.66 0.667368
Target:  5'- aCGGcGAACGcgugaCGCCaGCUC-CGUGGCCg -3'
miRNA:   3'- -GCCaUUUGCc----GCGG-CGGGaGCGCCGG- -5'
30596 3' -61.1 NC_006549.1 + 56347 0.66 0.667368
Target:  5'- cCGGac-GCGGCuuuccaaccgGCUGCCCUCaGCaGGUCg -3'
miRNA:   3'- -GCCauuUGCCG----------CGGCGGGAG-CG-CCGG- -5'
30596 3' -61.1 NC_006549.1 + 82825 0.66 0.667368
Target:  5'- gCGGgagcCGGCGCUGCCggaGCGGgCu -3'
miRNA:   3'- -GCCauuuGCCGCGGCGGgagCGCCgG- -5'
30596 3' -61.1 NC_006549.1 + 113831 0.68 0.579051
Target:  5'- uGGUGcccAGCGaGUuuuuuaucGCgGCCCUCGUGGUCc -3'
miRNA:   3'- gCCAU---UUGC-CG--------CGgCGGGAGCGCCGG- -5'
30596 3' -61.1 NC_006549.1 + 22871 0.68 0.550011
Target:  5'- ---aAAACGGCuaCGCuCCUCGCGcgcGCCg -3'
miRNA:   3'- gccaUUUGCCGcgGCG-GGAGCGC---CGG- -5'
30596 3' -61.1 NC_006549.1 + 60993 0.7 0.484282
Target:  5'- ---cAGAUGGCGCUGCCgCacgGCGGCCu -3'
miRNA:   3'- gccaUUUGCCGCGGCGG-Gag-CGCCGG- -5'
30596 3' -61.1 NC_006549.1 + 69542 0.71 0.431082
Target:  5'- aCGGU-AACGGCuCCGUCCgucggGCGGCUc -3'
miRNA:   3'- -GCCAuUUGCCGcGGCGGGag---CGCCGG- -5'
30596 3' -61.1 NC_006549.1 + 7783 0.71 0.397577
Target:  5'- aGGgaccgucCGGCaGCgCGUCCUCGgGGCCg -3'
miRNA:   3'- gCCauuu---GCCG-CG-GCGGGAGCgCCGG- -5'
30596 3' -61.1 NC_006549.1 + 52947 1.12 0.000685
Target:  5'- cCGGUAAACGGCGCCGCCCUCGCGGCCg -3'
miRNA:   3'- -GCCAUUUGCCGCGGCGGGAGCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.