Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30597 | 3' | -48 | NC_006549.1 | + | 83213 | 0.66 | 0.999607 |
Target: 5'- --aCugGCGUAcGGuACCGUGGCGcucACCc -3' miRNA: 3'- auaGugUGCGUuUC-UGGCAUUGC---UGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 41756 | 0.66 | 0.99922 |
Target: 5'- -cUgGCGCGCAAGGuCCGUcuggcaaGACugGACCc -3' miRNA: 3'- auAgUGUGCGUUUCuGGCA-------UUG--CUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 80130 | 0.66 | 0.999236 |
Target: 5'- aAUUACgagGCGCuGGAGAUCGUgGGCGACg -3' miRNA: 3'- aUAGUG---UGCG-UUUCUGGCA-UUGCUGg -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 74544 | 0.66 | 0.999236 |
Target: 5'- --aCugACGgaaaUAGGGGCCGUGugGGCg -3' miRNA: 3'- auaGugUGC----GUUUCUGGCAUugCUGg -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 126925 | 0.66 | 0.999236 |
Target: 5'- --aUACACGCccGAAGACgUGUacGACGAUCu -3' miRNA: 3'- auaGUGUGCG--UUUCUG-GCA--UUGCUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 125757 | 0.66 | 0.999236 |
Target: 5'- -cUCGCAaucUGCGgccaGGGAuCCGaGACGACCg -3' miRNA: 3'- auAGUGU---GCGU----UUCU-GGCaUUGCUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 71587 | 0.66 | 0.999236 |
Target: 5'- uUGUCGC-UGUAAucuuCCGUGGCGAUCu -3' miRNA: 3'- -AUAGUGuGCGUUucu-GGCAUUGCUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 80558 | 0.66 | 0.999371 |
Target: 5'- --aCACACgGCAAAGACgGUcauggguucguccGcCGACCu -3' miRNA: 3'- auaGUGUG-CGUUUCUGgCA-------------UuGCUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 69082 | 0.66 | 0.999384 |
Target: 5'- gUAUCGCACGUucgcGGCC--AACGACa -3' miRNA: 3'- -AUAGUGUGCGuuu-CUGGcaUUGCUGg -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 35875 | 0.66 | 0.999384 |
Target: 5'- ---gGCGUGCGGAGAacCCGgaaaAGCGACCa -3' miRNA: 3'- auagUGUGCGUUUCU--GGCa---UUGCUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 97226 | 0.67 | 0.997553 |
Target: 5'- -cUCugGCGCcGAcaacagacuGGCCGUGAUGGCg -3' miRNA: 3'- auAGugUGCGuUU---------CUGGCAUUGCUGg -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 97317 | 0.67 | 0.998302 |
Target: 5'- -uUCGCGCaaGCAGAGA-CGgcGCuGACCg -3' miRNA: 3'- auAGUGUG--CGUUUCUgGCauUG-CUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 69557 | 0.67 | 0.998848 |
Target: 5'- cUAUCGaa-GaCGAGGACgGUAACGGCUc -3' miRNA: 3'- -AUAGUgugC-GUUUCUGgCAUUGCUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 65916 | 0.68 | 0.997035 |
Target: 5'- -cUCGCACGCGucgcccAAGGCCuuugcuucuuguuGUuuuACGGCCa -3' miRNA: 3'- auAGUGUGCGU------UUCUGG-------------CAu--UGCUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 44255 | 0.68 | 0.996488 |
Target: 5'- cGUCACGaGCAAaauuGGAcuguugauauguuCCGUGGCGAUCg -3' miRNA: 3'- aUAGUGUgCGUU----UCU-------------GGCAUUGCUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 105113 | 0.68 | 0.995928 |
Target: 5'- uUGUCACACGCGGGGAUuaccuccaCG-AACGAa- -3' miRNA: 3'- -AUAGUGUGCGUUUCUG--------GCaUUGCUgg -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 31439 | 0.68 | 0.995928 |
Target: 5'- gAUCGCgaGCGCAucauGGccaauuuuGCCGUAGCGAUa -3' miRNA: 3'- aUAGUG--UGCGUu---UC--------UGGCAUUGCUGg -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 83508 | 0.68 | 0.995221 |
Target: 5'- -uUCGCGC-CGGaaccGGACC-UGACGGCCg -3' miRNA: 3'- auAGUGUGcGUU----UCUGGcAUUGCUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 53465 | 0.68 | 0.994418 |
Target: 5'- --aUACGCGCgAGAGACgaGcgGGCGGCCg -3' miRNA: 3'- auaGUGUGCG-UUUCUGg-Ca-UUGCUGG- -5' |
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30597 | 3' | -48 | NC_006549.1 | + | 64024 | 0.68 | 0.994418 |
Target: 5'- -uUUAguCGUGAGGGCCGUGGCGuACg -3' miRNA: 3'- auAGUguGCGUUUCUGGCAUUGC-UGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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