Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30597 | 3' | -48 | NC_006549.1 | + | 21694 | 0.69 | 0.993509 |
Target: 5'- aAUCuC-CGCAu-GACCGUAGCGuaACCg -3' miRNA: 3'- aUAGuGuGCGUuuCUGGCAUUGC--UGG- -5' |
|||||||
30597 | 3' | -48 | NC_006549.1 | + | 11161 | 0.69 | 0.991337 |
Target: 5'- ---aGCGCGaCAGAGACCGagAAUGGCa -3' miRNA: 3'- auagUGUGC-GUUUCUGGCa-UUGCUGg -5' |
|||||||
30597 | 3' | -48 | NC_006549.1 | + | 107077 | 0.7 | 0.988628 |
Target: 5'- -uUCGCAUGCGuAGACCuaAACGAUUg -3' miRNA: 3'- auAGUGUGCGUuUCUGGcaUUGCUGG- -5' |
|||||||
30597 | 3' | -48 | NC_006549.1 | + | 12650 | 0.72 | 0.960297 |
Target: 5'- -uUCAUGCGCAaucgucuccuacaGAGGCCGUAuauuCGugCg -3' miRNA: 3'- auAGUGUGCGU-------------UUCUGGCAUu---GCugG- -5' |
|||||||
30597 | 3' | -48 | NC_006549.1 | + | 3817 | 0.72 | 0.952661 |
Target: 5'- aUcgCGCACGUGAAcGCCGUGGCGAa- -3' miRNA: 3'- -AuaGUGUGCGUUUcUGGCAUUGCUgg -5' |
|||||||
30597 | 3' | -48 | NC_006549.1 | + | 73983 | 0.73 | 0.935624 |
Target: 5'- gAUCGCGCGCAAuGGAcagagacugcauuucCCGUAGCGAa- -3' miRNA: 3'- aUAGUGUGCGUU-UCU---------------GGCAUUGCUgg -5' |
|||||||
30597 | 3' | -48 | NC_006549.1 | + | 54185 | 1.12 | 0.010209 |
Target: 5'- cUAUCACACGCAAAGACCGUAACGACCg -3' miRNA: 3'- -AUAGUGUGCGUUUCUGGCAUUGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home