miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30598 3' -57.9 NC_006549.1 + 44600 0.67 0.783423
Target:  5'- uGGACGCGGCcaauggaaaUUuuacguguaaUCCGugCGGCaaaUGCg -3'
miRNA:   3'- gCCUGCGCCG---------AA----------AGGUugGCCG---ACGg -5'
30598 3' -57.9 NC_006549.1 + 117652 0.68 0.707172
Target:  5'- aGGAgGCGGCUUccaCCAGCucuccuCGuGCUGCg -3'
miRNA:   3'- gCCUgCGCCGAAa--GGUUG------GC-CGACGg -5'
30598 3' -57.9 NC_006549.1 + 120056 0.71 0.546876
Target:  5'- gCGGACGCaaagGGUUUgCguACCGGCUGUUu -3'
miRNA:   3'- -GCCUGCG----CCGAAaGguUGGCCGACGG- -5'
30598 3' -57.9 NC_006549.1 + 56347 1.11 0.001432
Target:  5'- cCGGACGCGGCUUUCCAACCGGCUGCCc -3'
miRNA:   3'- -GCCUGCGCCGAAAGGUUGGCCGACGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.