miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30598 5' -53.8 NC_006549.1 + 120444 0.66 0.957593
Target:  5'- aCGGCcuuuuCGAC-GG-GACUGCUGCa -3'
miRNA:   3'- aGCCGuuu--GUUGaCCuCUGGCGACGg -5'
30598 5' -53.8 NC_006549.1 + 80149 0.66 0.951201
Target:  5'- aUCGGUAGaucccgucaauaauuACGaggcGCUGGAGAUCGUggGCg -3'
miRNA:   3'- -AGCCGUU---------------UGU----UGACCUCUGGCGa-CGg -5'
30598 5' -53.8 NC_006549.1 + 78002 0.68 0.894356
Target:  5'- aUGGCAGACA---GGGGcagucccguGCCGCUcGCCa -3'
miRNA:   3'- aGCCGUUUGUugaCCUC---------UGGCGA-CGG- -5'
30598 5' -53.8 NC_006549.1 + 79642 0.68 0.887493
Target:  5'- -aGGCGAACGGCucgUGGGGuCCGCcaCCg -3'
miRNA:   3'- agCCGUUUGUUG---ACCUCuGGCGacGG- -5'
30598 5' -53.8 NC_006549.1 + 99999 0.69 0.865515
Target:  5'- -gGGUGGAgGACUcgGGAGAggucCCGUUGCCc -3'
miRNA:   3'- agCCGUUUgUUGA--CCUCU----GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 100062 0.69 0.865515
Target:  5'- -gGGUGGAgGACUcgGGAGAggucCCGUUGCCc -3'
miRNA:   3'- agCCGUUUgUUGA--CCUCU----GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 100125 0.69 0.865515
Target:  5'- -gGGUGGAgGACUcgGGAGAggucCCGUUGCCc -3'
miRNA:   3'- agCCGUUUgUUGA--CCUCU----GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 100188 0.69 0.865515
Target:  5'- -gGGUGGAgGACUcgGGAGAggucCCGUUGCCc -3'
miRNA:   3'- agCCGUUUgUUGA--CCUCU----GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 100250 0.69 0.865515
Target:  5'- -gGGUGGAgGACUcgGGAGAggucCCGUUGCCc -3'
miRNA:   3'- agCCGUUUgUUGA--CCUCU----GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 99936 0.69 0.865515
Target:  5'- -gGGUGGAgGACUcgGGAGAggucCCGUUGCCc -3'
miRNA:   3'- agCCGUUUgUUGA--CCUCU----GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 99873 0.69 0.865515
Target:  5'- -gGGUGGAgGACUcgGGAGAggucCCGUUGCCc -3'
miRNA:   3'- agCCGUUUgUUGA--CCUCU----GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 99810 0.69 0.865515
Target:  5'- -gGGUGGAgGACUcgGGAGAggucCCGUUGCCc -3'
miRNA:   3'- agCCGUUUgUUGA--CCUCU----GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 99747 0.69 0.865515
Target:  5'- -gGGUGGAgGACUcgGGAGAggucCCGUUGCCc -3'
miRNA:   3'- agCCGUUUgUUGA--CCUCU----GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 99684 0.69 0.865515
Target:  5'- -gGGUGGAgGACUcgGGAGAggucCCGUUGCCc -3'
miRNA:   3'- agCCGUUUgUUGA--CCUCU----GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 99621 0.69 0.865515
Target:  5'- -gGGUGGAgGACUcgGGAGAggucCCGUUGCCc -3'
miRNA:   3'- agCCGUUUgUUGA--CCUCU----GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 53306 0.69 0.865515
Target:  5'- aCGGCAGACccgaaGAGGCCGCgGCg -3'
miRNA:   3'- aGCCGUUUGuugacCUCUGGCGaCGg -5'
30598 5' -53.8 NC_006549.1 + 117782 0.69 0.833182
Target:  5'- gCGGCAAAUAaaACUGGAuguggaauaccaGAcuguuuugacuCCGUUGCCg -3'
miRNA:   3'- aGCCGUUUGU--UGACCU------------CU-----------GGCGACGG- -5'
30598 5' -53.8 NC_006549.1 + 131141 0.72 0.710028
Target:  5'- uUCGGCAAACccgugaUGGcAGGCCGCcGCg -3'
miRNA:   3'- -AGCCGUUUGuug---ACC-UCUGGCGaCGg -5'
30598 5' -53.8 NC_006549.1 + 56312 1.03 0.010429
Target:  5'- gUCGGCAAACAAC-GGAGACCGCUGCCg -3'
miRNA:   3'- -AGCCGUUUGUUGaCCUCUGGCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.