Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30599 | 3' | -60.4 | NC_006549.1 | + | 11940 | 0.66 | 0.709803 |
Target: 5'- -gGCCCaGAG-GCAGUCuCGUUUCCCc -3' miRNA: 3'- agCGGGaCUCgUGUCGGcGCAGAGGG- -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 21506 | 0.66 | 0.700039 |
Target: 5'- uUCGUC--GGGCGCcGCaGCGUUUCCCa -3' miRNA: 3'- -AGCGGgaCUCGUGuCGgCGCAGAGGG- -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 102388 | 0.66 | 0.690221 |
Target: 5'- -gGCCCuUGuGgACccauggGGcCCGUGUCUCCCa -3' miRNA: 3'- agCGGG-ACuCgUG------UC-GGCGCAGAGGG- -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 78813 | 0.66 | 0.688251 |
Target: 5'- aCGUUCUGAGCAUcaccgguucucuGCCGgGUCUCg- -3' miRNA: 3'- aGCGGGACUCGUGu-----------CGGCgCAGAGgg -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 60781 | 0.67 | 0.670454 |
Target: 5'- cCGCCCUGGuucuGUgaACGuaCGCGUUUCCUa -3' miRNA: 3'- aGCGGGACU----CG--UGUcgGCGCAGAGGG- -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 7108 | 0.67 | 0.670454 |
Target: 5'- -gGCCCaUGGGCcCAGUCGgG-CUCCa -3' miRNA: 3'- agCGGG-ACUCGuGUCGGCgCaGAGGg -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 1944 | 0.67 | 0.660523 |
Target: 5'- cCGCCC-GAGCGC-GUCGUGaCgCCCa -3' miRNA: 3'- aGCGGGaCUCGUGuCGGCGCaGaGGG- -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 50257 | 0.67 | 0.630629 |
Target: 5'- -aGCCUUuuccaGGCG-GGCCaGCGUCUCCCa -3' miRNA: 3'- agCGGGAc----UCGUgUCGG-CGCAGAGGG- -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 14589 | 0.69 | 0.516736 |
Target: 5'- cCGCCCUGGGUuucaacacggcuucuACAGCCGUGgcgcgaugauuuUCUUCg -3' miRNA: 3'- aGCGGGACUCG---------------UGUCGGCGC------------AGAGGg -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 102176 | 0.7 | 0.475556 |
Target: 5'- -aGUCCUGGGC--GGCCGUauUCUCCCg -3' miRNA: 3'- agCGGGACUCGugUCGGCGc-AGAGGG- -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 21054 | 0.72 | 0.388685 |
Target: 5'- uUCGCCg-GuuuGCACGGCCGCG-C-CCCg -3' miRNA: 3'- -AGCGGgaCu--CGUGUCGGCGCaGaGGG- -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 98972 | 0.73 | 0.327113 |
Target: 5'- gCGCCC---GCGCuGGCCGCGUUUUCCa -3' miRNA: 3'- aGCGGGacuCGUG-UCGGCGCAGAGGG- -5' |
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30599 | 3' | -60.4 | NC_006549.1 | + | 57061 | 1.1 | 0.000841 |
Target: 5'- gUCGCCCUGAGCACAGCCGCGUCUCCCc -3' miRNA: 3'- -AGCGGGACUCGUGUCGGCGCAGAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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