miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30599 3' -60.4 NC_006549.1 + 11940 0.66 0.709803
Target:  5'- -gGCCCaGAG-GCAGUCuCGUUUCCCc -3'
miRNA:   3'- agCGGGaCUCgUGUCGGcGCAGAGGG- -5'
30599 3' -60.4 NC_006549.1 + 21506 0.66 0.700039
Target:  5'- uUCGUC--GGGCGCcGCaGCGUUUCCCa -3'
miRNA:   3'- -AGCGGgaCUCGUGuCGgCGCAGAGGG- -5'
30599 3' -60.4 NC_006549.1 + 102388 0.66 0.690221
Target:  5'- -gGCCCuUGuGgACccauggGGcCCGUGUCUCCCa -3'
miRNA:   3'- agCGGG-ACuCgUG------UC-GGCGCAGAGGG- -5'
30599 3' -60.4 NC_006549.1 + 78813 0.66 0.688251
Target:  5'- aCGUUCUGAGCAUcaccgguucucuGCCGgGUCUCg- -3'
miRNA:   3'- aGCGGGACUCGUGu-----------CGGCgCAGAGgg -5'
30599 3' -60.4 NC_006549.1 + 60781 0.67 0.670454
Target:  5'- cCGCCCUGGuucuGUgaACGuaCGCGUUUCCUa -3'
miRNA:   3'- aGCGGGACU----CG--UGUcgGCGCAGAGGG- -5'
30599 3' -60.4 NC_006549.1 + 7108 0.67 0.670454
Target:  5'- -gGCCCaUGGGCcCAGUCGgG-CUCCa -3'
miRNA:   3'- agCGGG-ACUCGuGUCGGCgCaGAGGg -5'
30599 3' -60.4 NC_006549.1 + 1944 0.67 0.660523
Target:  5'- cCGCCC-GAGCGC-GUCGUGaCgCCCa -3'
miRNA:   3'- aGCGGGaCUCGUGuCGGCGCaGaGGG- -5'
30599 3' -60.4 NC_006549.1 + 50257 0.67 0.630629
Target:  5'- -aGCCUUuuccaGGCG-GGCCaGCGUCUCCCa -3'
miRNA:   3'- agCGGGAc----UCGUgUCGG-CGCAGAGGG- -5'
30599 3' -60.4 NC_006549.1 + 14589 0.69 0.516736
Target:  5'- cCGCCCUGGGUuucaacacggcuucuACAGCCGUGgcgcgaugauuuUCUUCg -3'
miRNA:   3'- aGCGGGACUCG---------------UGUCGGCGC------------AGAGGg -5'
30599 3' -60.4 NC_006549.1 + 102176 0.7 0.475556
Target:  5'- -aGUCCUGGGC--GGCCGUauUCUCCCg -3'
miRNA:   3'- agCGGGACUCGugUCGGCGc-AGAGGG- -5'
30599 3' -60.4 NC_006549.1 + 21054 0.72 0.388685
Target:  5'- uUCGCCg-GuuuGCACGGCCGCG-C-CCCg -3'
miRNA:   3'- -AGCGGgaCu--CGUGUCGGCGCaGaGGG- -5'
30599 3' -60.4 NC_006549.1 + 98972 0.73 0.327113
Target:  5'- gCGCCC---GCGCuGGCCGCGUUUUCCa -3'
miRNA:   3'- aGCGGGacuCGUG-UCGGCGCAGAGGG- -5'
30599 3' -60.4 NC_006549.1 + 57061 1.1 0.000841
Target:  5'- gUCGCCCUGAGCACAGCCGCGUCUCCCc -3'
miRNA:   3'- -AGCGGGACUCGUGUCGGCGCAGAGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.