miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30601 5' -60.1 NC_006549.1 + 70639 0.66 0.74084
Target:  5'- aCgGCGGaagaggccgUGGCGUUGuGCGGUuUGgGCg -3'
miRNA:   3'- gGgCGCU---------GCCGCAAC-CGCCAcACgCG- -5'
30601 5' -60.1 NC_006549.1 + 132884 0.66 0.735201
Target:  5'- uCCCGUGGCGGCucuGaugagauacucucuuUUGGUGGgacucGCGCa -3'
miRNA:   3'- -GGGCGCUGCCG---C---------------AACCGCCaca--CGCG- -5'
30601 5' -60.1 NC_006549.1 + 117057 0.67 0.709483
Target:  5'- uUCCGCccaccauucuagagGACGGUGUUGa-GGUG-GCGCc -3'
miRNA:   3'- -GGGCG--------------CUGCCGCAACcgCCACaCGCG- -5'
30601 5' -60.1 NC_006549.1 + 87134 0.67 0.702736
Target:  5'- aCCGCGAguGCGUcgUGGCGGUGc-CGUc -3'
miRNA:   3'- gGGCGCUgcCGCA--ACCGCCACacGCG- -5'
30601 5' -60.1 NC_006549.1 + 23467 0.67 0.693052
Target:  5'- aUCGCGguacucGCGuGCGUU-GCGGUuUGCGCg -3'
miRNA:   3'- gGGCGC------UGC-CGCAAcCGCCAcACGCG- -5'
30601 5' -60.1 NC_006549.1 + 97774 0.67 0.683321
Target:  5'- gUCCGCaGAagUGGUGUUGGUgcaagacgcGGUGcuggGCGCg -3'
miRNA:   3'- -GGGCG-CU--GCCGCAACCG---------CCACa---CGCG- -5'
30601 5' -60.1 NC_006549.1 + 34028 0.68 0.663749
Target:  5'- cCCCGaCGACGGCG--GGUGGUu--CGCc -3'
miRNA:   3'- -GGGC-GCUGCCGCaaCCGCCAcacGCG- -5'
30601 5' -60.1 NC_006549.1 + 52700 0.68 0.644081
Target:  5'- aUCCGU--CaGCGUUGGCGGcuUGCGCc -3'
miRNA:   3'- -GGGCGcuGcCGCAACCGCCacACGCG- -5'
30601 5' -60.1 NC_006549.1 + 6170 0.68 0.634231
Target:  5'- aCCC-CGGCGGCGcUGGCGGcuuuuaGCa -3'
miRNA:   3'- -GGGcGCUGCCGCaACCGCCacacg-CG- -5'
30601 5' -60.1 NC_006549.1 + 33156 0.69 0.555938
Target:  5'- aCCCGCGGCGcacacuGCGGUGUGgGUg -3'
miRNA:   3'- -GGGCGCUGCcgcaacCGCCACACgCG- -5'
30601 5' -60.1 NC_006549.1 + 91300 0.7 0.546308
Target:  5'- aCuuGCGACgGGCGUc-GCGuccGUGUGCGUa -3'
miRNA:   3'- -GggCGCUG-CCGCAacCGC---CACACGCG- -5'
30601 5' -60.1 NC_006549.1 + 134672 0.7 0.499068
Target:  5'- aCCGCGACGGCG--GGCauuucGUccguuuucucGUGCGCa -3'
miRNA:   3'- gGGCGCUGCCGCaaCCGc----CA----------CACGCG- -5'
30601 5' -60.1 NC_006549.1 + 60465 1.11 0.000926
Target:  5'- gCCCGCGACGGCGUUGGCGGUGUGCGCc -3'
miRNA:   3'- -GGGCGCUGCCGCAACCGCCACACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.