miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30602 3' -58.2 NC_006549.1 + 52888 0.74 0.388085
Target:  5'- gGCGGAACCCCUGCCcgaagGAGCCUugauauuuuuGCGUAg -3'
miRNA:   3'- -CGCUUUGGGGGCGG-----CUUGGG----------UGCGUg -5'
30602 3' -58.2 NC_006549.1 + 52938 0.77 0.265301
Target:  5'- gGCGccGCCCUCGCggccgacgaagaCGAGCCCGCGCAa -3'
miRNA:   3'- -CGCuuUGGGGGCG------------GCUUGGGUGCGUg -5'
30602 3' -58.2 NC_006549.1 + 69620 0.67 0.7882
Target:  5'- aUGAGACgUauGCUGGACCC-CGCGCg -3'
miRNA:   3'- cGCUUUGgGggCGGCUUGGGuGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 72048 1.11 0.001217
Target:  5'- uGCGAAACCCCCGCCGAACCCACGCACg -3'
miRNA:   3'- -CGCUUUGGGGGCGGCUUGGGUGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 76313 0.68 0.712532
Target:  5'- cGUGAAACgaCCCGUCaaAACCCAUGUGCc -3'
miRNA:   3'- -CGCUUUGg-GGGCGGc-UUGGGUGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 88715 0.69 0.656765
Target:  5'- cGCGAAGCCUucuuuuggccugaaaUCGCCGuggcgaaaacACUCAUGCACg -3'
miRNA:   3'- -CGCUUUGGG---------------GGCGGCu---------UGGGUGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 96587 0.67 0.769927
Target:  5'- uCGAGugCUCCGCgGAucgcucgcuaACCCuuGCGCu -3'
miRNA:   3'- cGCUUugGGGGCGgCU----------UGGGugCGUG- -5'
30602 3' -58.2 NC_006549.1 + 117026 0.66 0.805928
Target:  5'- gGUGgcGCCCCCGUCaucucuGCCaaaaguggaACGCACa -3'
miRNA:   3'- -CGCuuUGGGGGCGGcu----UGGg--------UGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 120638 0.72 0.466607
Target:  5'- cGCGGG--CCCCGCaguugaauggaaCGAGCCCAgCGCGCg -3'
miRNA:   3'- -CGCUUugGGGGCG------------GCUUGGGU-GCGUG- -5'
30602 3' -58.2 NC_006549.1 + 125231 0.69 0.652742
Target:  5'- uGCGGAGacugCCCCGUuaCG-AUCCAUGCACa -3'
miRNA:   3'- -CGCUUUg---GGGGCG--GCuUGGGUGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 132551 0.68 0.722315
Target:  5'- uCGuucGCCCgCGUCGAAuCCCACGC-Cg -3'
miRNA:   3'- cGCuu-UGGGgGCGGCUU-GGGUGCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.