miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30602 3' -58.2 NC_006549.1 + 40597 0.71 0.542738
Target:  5'- cGCaAGGCCCCC-CCGGGCCCGC-CGg -3'
miRNA:   3'- -CGcUUUGGGGGcGGCUUGGGUGcGUg -5'
30602 3' -58.2 NC_006549.1 + 9672 0.71 0.513618
Target:  5'- cCGGAGCCgCCCguuGCCGAAggCGCGCGCa -3'
miRNA:   3'- cGCUUUGG-GGG---CGGCUUggGUGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 120638 0.72 0.466607
Target:  5'- cGCGGG--CCCCGCaguugaauggaaCGAGCCCAgCGCGCg -3'
miRNA:   3'- -CGCUUugGGGGCG------------GCUUGGGU-GCGUG- -5'
30602 3' -58.2 NC_006549.1 + 49824 0.72 0.461113
Target:  5'- aGCGAGACCcuuuggucccgugggCCCaGCUGGGCCCACGgGa -3'
miRNA:   3'- -CGCUUUGG---------------GGG-CGGCUUGGGUGCgUg -5'
30602 3' -58.2 NC_006549.1 + 41712 0.73 0.452034
Target:  5'- cGCGGGcCCCCCGgcccccccggcccccCUGGGCCCGCGgGCc -3'
miRNA:   3'- -CGCUUuGGGGGC---------------GGCUUGGGUGCgUG- -5'
30602 3' -58.2 NC_006549.1 + 41840 0.73 0.430652
Target:  5'- cGCGAgGACCCCCgggggcGCCGGGCCCGagaGgGCc -3'
miRNA:   3'- -CGCU-UUGGGGG------CGGCUUGGGUg--CgUG- -5'
30602 3' -58.2 NC_006549.1 + 7077 0.73 0.412439
Target:  5'- cGCGGGucccaccggacccGCCgggCCCGCCGGACCC-CGCGg -3'
miRNA:   3'- -CGCUU-------------UGG---GGGCGGCUUGGGuGCGUg -5'
30602 3' -58.2 NC_006549.1 + 52888 0.74 0.388085
Target:  5'- gGCGGAACCCCUGCCcgaagGAGCCUugauauuuuuGCGUAg -3'
miRNA:   3'- -CGCUUUGGGGGCGG-----CUUGGG----------UGCGUg -5'
30602 3' -58.2 NC_006549.1 + 52938 0.77 0.265301
Target:  5'- gGCGccGCCCUCGCggccgacgaagaCGAGCCCGCGCAa -3'
miRNA:   3'- -CGCuuUGGGGGCG------------GCUUGGGUGCGUg -5'
30602 3' -58.2 NC_006549.1 + 22901 0.8 0.155271
Target:  5'- uGCGAGGCUUCCGCCGGACaaCACGUGCa -3'
miRNA:   3'- -CGCUUUGGGGGCGGCUUGg-GUGCGUG- -5'
30602 3' -58.2 NC_006549.1 + 72048 1.11 0.001217
Target:  5'- uGCGAAACCCCCGCCGAACCCACGCACg -3'
miRNA:   3'- -CGCUUUGGGGGCGGCUUGGGUGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.