miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30603 5' -52.8 NC_006549.1 + 76093 0.66 0.978121
Target:  5'- ---aGAGGAuccaGCACGGGCGC--CGGAa -3'
miRNA:   3'- ccugCUUCU----UGUGCCCGCGuaGUCUg -5'
30603 5' -52.8 NC_006549.1 + 41375 0.66 0.975646
Target:  5'- gGGACGAAGGGCccaGcGGCGaCAg-AGGCg -3'
miRNA:   3'- -CCUGCUUCUUGug-C-CCGC-GUagUCUG- -5'
30603 5' -52.8 NC_006549.1 + 51516 0.66 0.975646
Target:  5'- uGugGAAGGACACGGacCGCGUggugagaaaaacCAGAa -3'
miRNA:   3'- cCugCUUCUUGUGCCc-GCGUA------------GUCUg -5'
30603 5' -52.8 NC_006549.1 + 104427 0.66 0.970092
Target:  5'- -uACGGugAGAACAuCGGGUcUAUCGGGCg -3'
miRNA:   3'- ccUGCU--UCUUGU-GCCCGcGUAGUCUG- -5'
30603 5' -52.8 NC_006549.1 + 27149 0.66 0.966999
Target:  5'- gGGAUaGGGAACACauGGGCaaAUCAGAa -3'
miRNA:   3'- -CCUGcUUCUUGUG--CCCGcgUAGUCUg -5'
30603 5' -52.8 NC_006549.1 + 107474 0.67 0.956379
Target:  5'- uGACGuGGAcucACAUGGGCGCgcguguGUCcGACu -3'
miRNA:   3'- cCUGCuUCU---UGUGCCCGCG------UAGuCUG- -5'
30603 5' -52.8 NC_006549.1 + 92066 0.67 0.943643
Target:  5'- -aGCGucaccAGAGcCAUGGGCGCGUUGGAa -3'
miRNA:   3'- ccUGCu----UCUU-GUGCCCGCGUAGUCUg -5'
30603 5' -52.8 NC_006549.1 + 53322 0.68 0.938909
Target:  5'- ---gGAAG-ACGCGGcGCGCAcggCAGACc -3'
miRNA:   3'- ccugCUUCuUGUGCC-CGCGUa--GUCUG- -5'
30603 5' -52.8 NC_006549.1 + 54762 0.69 0.905281
Target:  5'- cGGCGugcucucGGGCAUGGGCacGCAUCAcGACg -3'
miRNA:   3'- cCUGCuu-----CUUGUGCCCG--CGUAGU-CUG- -5'
30603 5' -52.8 NC_006549.1 + 7849 0.69 0.89481
Target:  5'- cGGACGGucccguagguucgagGGGACccGCGGGCGU-UCAGGg -3'
miRNA:   3'- -CCUGCU---------------UCUUG--UGCCCGCGuAGUCUg -5'
30603 5' -52.8 NC_006549.1 + 5438 0.7 0.870544
Target:  5'- uGGGC-AGGGugGCGGGCGCGcUAGcCa -3'
miRNA:   3'- -CCUGcUUCUugUGCCCGCGUaGUCuG- -5'
30603 5' -52.8 NC_006549.1 + 135731 0.72 0.785258
Target:  5'- uGGACGAAGcuCuCGGGC-CGUCGGGa -3'
miRNA:   3'- -CCUGCUUCuuGuGCCCGcGUAGUCUg -5'
30603 5' -52.8 NC_006549.1 + 59253 0.72 0.746627
Target:  5'- gGGGCGAAGAGgGCuccuGGGUgGCGUgGGGCg -3'
miRNA:   3'- -CCUGCUUCUUgUG----CCCG-CGUAgUCUG- -5'
30603 5' -52.8 NC_006549.1 + 59199 0.72 0.746627
Target:  5'- gGGGCGAAGAGgGCuccuGGGUgGCGUgGGGCg -3'
miRNA:   3'- -CCUGCUUCUUgUG----CCCG-CGUAgUCUG- -5'
30603 5' -52.8 NC_006549.1 + 59145 0.72 0.746627
Target:  5'- gGGGCGAAGAGgGCuccuGGGUgGCGUgGGGCg -3'
miRNA:   3'- -CCUGCUUCUUgUG----CCCG-CGUAgUCUG- -5'
30603 5' -52.8 NC_006549.1 + 59091 0.72 0.746627
Target:  5'- gGGGCGAAGAGgGCuccuGGGUgGCGUgGGGCg -3'
miRNA:   3'- -CCUGCUUCUUgUG----CCCG-CGUAgUCUG- -5'
30603 5' -52.8 NC_006549.1 + 59037 0.72 0.746627
Target:  5'- gGGGCGAAGAGgGCuccuGGGUgGCGUgGGGCg -3'
miRNA:   3'- -CCUGCUUCUUgUG----CCCG-CGUAgUCUG- -5'
30603 5' -52.8 NC_006549.1 + 115944 0.73 0.706318
Target:  5'- cGGGCGcAGAGCACGGcaacaaCGCAgugcCAGACg -3'
miRNA:   3'- -CCUGCuUCUUGUGCCc-----GCGUa---GUCUG- -5'
30603 5' -52.8 NC_006549.1 + 43859 0.74 0.675363
Target:  5'- aGACGuAG-GCGCGGGCGUAaUAGACg -3'
miRNA:   3'- cCUGCuUCuUGUGCCCGCGUaGUCUG- -5'
30603 5' -52.8 NC_006549.1 + 11251 0.74 0.644074
Target:  5'- aGGuCGAGGAACGauUGGGCGCcaagccuaaaAUUAGACa -3'
miRNA:   3'- -CCuGCUUCUUGU--GCCCGCG----------UAGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.