Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30604 | 3' | -53.9 | NC_006549.1 | + | 7586 | 0.66 | 0.965364 |
|
Target: 5'- aCCGCGCACACucuuaaaccgGGGCaaACGG--UAGAg -3' miRNA: 3'- -GGCGUGUGUG----------UCCGcaUGCCuaGUCU- -5' |
|||||||
| 30604 | 3' | -53.9 | NC_006549.1 | + | 33991 | 0.67 | 0.926539 |
|
Target: 5'- cCCGCacaucaucuGCACACGGGCGcccuaaGCauGAUCGGAg -3' miRNA: 3'- -GGCG---------UGUGUGUCCGCa-----UGc-CUAGUCU- -5' |
|||||||
| 30604 | 3' | -53.9 | NC_006549.1 | + | 131116 | 0.67 | 0.926539 |
|
Target: 5'- gCCGCGuCAauaacaACGGGgGUACGGuGUUGGAa -3' miRNA: 3'- -GGCGU-GUg-----UGUCCgCAUGCC-UAGUCU- -5' |
|||||||
| 30604 | 3' | -53.9 | NC_006549.1 | + | 3814 | 0.67 | 0.921024 |
|
Target: 5'- gCGCACgugaACGCcguGGCGaaauggUGCGGGUUAGAc -3' miRNA: 3'- gGCGUG----UGUGu--CCGC------AUGCCUAGUCU- -5' |
|||||||
| 30604 | 3' | -53.9 | NC_006549.1 | + | 70672 | 0.68 | 0.889823 |
|
Target: 5'- cCCGUAgGCACcacauucaAGGCGUugGGGaaaacggCGGAa -3' miRNA: 3'- -GGCGUgUGUG--------UCCGCAugCCUa------GUCU- -5' |
|||||||
| 30604 | 3' | -53.9 | NC_006549.1 | + | 43062 | 0.68 | 0.889823 |
|
Target: 5'- uCCGUACGCGCuAGGUGUACcGGGg---- -3' miRNA: 3'- -GGCGUGUGUG-UCCGCAUG-CCUagucu -5' |
|||||||
| 30604 | 3' | -53.9 | NC_006549.1 | + | 10581 | 0.7 | 0.828189 |
|
Target: 5'- aCGCGaACGCAGGCGUuuggaaAUGGAagCGGAa -3' miRNA: 3'- gGCGUgUGUGUCCGCA------UGCCUa-GUCU- -5' |
|||||||
| 30604 | 3' | -53.9 | NC_006549.1 | + | 76357 | 1.1 | 0.003722 |
|
Target: 5'- uCCGCACACACAGGCGUACGGAUCAGAc -3' miRNA: 3'- -GGCGUGUGUGUCCGCAUGCCUAGUCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home