Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30604 | 5' | -59.8 | NC_006549.1 | + | 52718 | 0.66 | 0.77806 |
Target: 5'- gCgCgGCCauGgcGGGCGAUCCGUCAg -3' miRNA: 3'- aGgGgCGGggCauUCUGCUGGGCAGU- -5' |
|||||||
30604 | 5' | -59.8 | NC_006549.1 | + | 36919 | 0.68 | 0.623769 |
Target: 5'- --aCgGCCCCGUuuauAGACGGCUCGUa- -3' miRNA: 3'- aggGgCGGGGCAu---UCUGCUGGGCAgu -5' |
|||||||
30604 | 5' | -59.8 | NC_006549.1 | + | 13872 | 0.69 | 0.584194 |
Target: 5'- cUCCCCGUCaugCUGUAcgaAGACGACCCcaaagGUCu -3' miRNA: 3'- -AGGGGCGG---GGCAU---UCUGCUGGG-----CAGu -5' |
|||||||
30604 | 5' | -59.8 | NC_006549.1 | + | 128704 | 0.69 | 0.554831 |
Target: 5'- cUCCCGUCUCGUAAGAacACCCG-CAu -3' miRNA: 3'- aGGGGCGGGGCAUUCUgcUGGGCaGU- -5' |
|||||||
30604 | 5' | -59.8 | NC_006549.1 | + | 40517 | 0.7 | 0.539344 |
Target: 5'- cCCCCugGCCCCGUAGGACccacgggucccagagGACCCc--- -3' miRNA: 3'- aGGGG--CGGGGCAUUCUG---------------CUGGGcagu -5' |
|||||||
30604 | 5' | -59.8 | NC_006549.1 | + | 49728 | 0.72 | 0.400439 |
Target: 5'- cCCCCGCgggCCCGUGGGGCccguuGGCCCG-CGa -3' miRNA: 3'- aGGGGCG---GGGCAUUCUG-----CUGGGCaGU- -5' |
|||||||
30604 | 5' | -59.8 | NC_006549.1 | + | 76323 | 0.98 | 0.007777 |
Target: 5'- cUCCCCGCCCCGUGAaACGACCCGUCAa -3' miRNA: 3'- -AGGGGCGGGGCAUUcUGCUGGGCAGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home