miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30605 5' -58.7 NC_006549.1 + 79588 0.66 0.799796
Target:  5'- aGACGCcGCCGCGcGCGCCUUGacGCu -3'
miRNA:   3'- cCUGUGcUGGUGU-CGCGGGACacCGu -5'
30605 5' -58.7 NC_006549.1 + 100702 0.66 0.799796
Target:  5'- gGGGCugGCGACCAaAGCGCgCUGgUGuGCc -3'
miRNA:   3'- -CCUG--UGCUGGUgUCGCGgGAC-AC-CGu -5'
30605 5' -58.7 NC_006549.1 + 139483 0.66 0.772629
Target:  5'- uGGA-AUGACCACAGC-UCUUG-GGCAg -3'
miRNA:   3'- -CCUgUGCUGGUGUCGcGGGACaCCGU- -5'
30605 5' -58.7 NC_006549.1 + 44003 0.66 0.772629
Target:  5'- cGGGUACGAUCuguACAGCGCCCaagauuUGGCc -3'
miRNA:   3'- -CCUGUGCUGG---UGUCGCGGGac----ACCGu -5'
30605 5' -58.7 NC_006549.1 + 49677 0.67 0.734738
Target:  5'- gGGACcuuGCGGacCCACGGUGCCCUugGGUc -3'
miRNA:   3'- -CCUG---UGCU--GGUGUCGCGGGAcaCCGu -5'
30605 5' -58.7 NC_006549.1 + 56346 0.67 0.705376
Target:  5'- cGGACGCGGCUuuccaacCGGCuGCCCUcagcagGUcGGCAa -3'
miRNA:   3'- -CCUGUGCUGGu------GUCG-CGGGA------CA-CCGU- -5'
30605 5' -58.7 NC_006549.1 + 41732 0.7 0.574738
Target:  5'- aGACugGACCcaGgGGCGCCCgcgGGCc -3'
miRNA:   3'- cCUGugCUGG--UgUCGCGGGacaCCGu -5'
30605 5' -58.7 NC_006549.1 + 72142 0.7 0.535163
Target:  5'- aGGA-AUGAgCACAGCGCCCgagacaauaGUGGCc -3'
miRNA:   3'- -CCUgUGCUgGUGUCGCGGGa--------CACCGu -5'
30605 5' -58.7 NC_006549.1 + 83495 0.73 0.389576
Target:  5'- cGGACcugACGGCCGUGGUGCCC-GUGGCc -3'
miRNA:   3'- -CCUG---UGCUGGUGUCGCGGGaCACCGu -5'
30605 5' -58.7 NC_006549.1 + 130709 0.74 0.357402
Target:  5'- uGGACGCGGCCGUAGCGCgCaaaaUGUGGgGu -3'
miRNA:   3'- -CCUGUGCUGGUGUCGCG-Gg---ACACCgU- -5'
30605 5' -58.7 NC_006549.1 + 76777 1.1 0.001343
Target:  5'- gGGACACGACCACAGCGCCCUGUGGCAc -3'
miRNA:   3'- -CCUGUGCUGGUGUCGCGGGACACCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.