miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30606 5' -65 NC_006549.1 + 82819 0.66 0.471225
Target:  5'- -gCCGGcGCUGccGGAGCGGGcuugacGGCGUCc -3'
miRNA:   3'- ugGGCC-CGGCu-CCUCGCCU------CCGCAGa -5'
30606 5' -65 NC_006549.1 + 102448 0.66 0.471225
Target:  5'- -gCUGGGCCGGGGGGUccaGGAGG-GcCg -3'
miRNA:   3'- ugGGCCCGGCUCCUCG---CCUCCgCaGa -5'
30606 5' -65 NC_006549.1 + 119632 0.66 0.471225
Target:  5'- cGCUgGGaGCUG-GGGGCGGAggGGCGUgCUg -3'
miRNA:   3'- -UGGgCC-CGGCuCCUCGCCU--CCGCA-GA- -5'
30606 5' -65 NC_006549.1 + 49864 0.67 0.42798
Target:  5'- gGCCCggGGGCCcaGGGGGGCccGGAGGCc--- -3'
miRNA:   3'- -UGGG--CCCGG--CUCCUCG--CCUCCGcaga -5'
30606 5' -65 NC_006549.1 + 100082 0.68 0.403186
Target:  5'- gACCuCGGGCUucggggGAGGGGUGGAGGacUCg -3'
miRNA:   3'- -UGG-GCCCGG------CUCCUCGCCUCCgcAGa -5'
30606 5' -65 NC_006549.1 + 100145 0.68 0.403186
Target:  5'- gACCuCGGGCUucggggGAGGGGUGGAGGacUCg -3'
miRNA:   3'- -UGG-GCCCGG------CUCCUCGCCUCCgcAGa -5'
30606 5' -65 NC_006549.1 + 100208 0.68 0.403186
Target:  5'- gACCuCGGGCUucggggGAGGGGUGGAGGacUCg -3'
miRNA:   3'- -UGG-GCCCGG------CUCCUCGCCUCCgcAGa -5'
30606 5' -65 NC_006549.1 + 100270 0.68 0.403186
Target:  5'- gACCuCGGGCUucggggGAGGGGUGGAGGacUCg -3'
miRNA:   3'- -UGG-GCCCGG------CUCCUCGCCUCCgcAGa -5'
30606 5' -65 NC_006549.1 + 16197 0.68 0.403186
Target:  5'- gGCuuGGGggggguagGGGGAGUaGGAGGCGUCg -3'
miRNA:   3'- -UGggCCCgg------CUCCUCG-CCUCCGCAGa -5'
30606 5' -65 NC_006549.1 + 100019 0.68 0.403186
Target:  5'- gACCuCGGGCUucggggGAGGGGUGGAGGacUCg -3'
miRNA:   3'- -UGG-GCCCGG------CUCCUCGCCUCCgcAGa -5'
30606 5' -65 NC_006549.1 + 99956 0.68 0.403186
Target:  5'- gACCuCGGGCUucggggGAGGGGUGGAGGacUCg -3'
miRNA:   3'- -UGG-GCCCGG------CUCCUCGCCUCCgcAGa -5'
30606 5' -65 NC_006549.1 + 99893 0.68 0.403186
Target:  5'- gACCuCGGGCUucggggGAGGGGUGGAGGacUCg -3'
miRNA:   3'- -UGG-GCCCGG------CUCCUCGCCUCCgcAGa -5'
30606 5' -65 NC_006549.1 + 99830 0.68 0.403186
Target:  5'- gACCuCGGGCUucggggGAGGGGUGGAGGacUCg -3'
miRNA:   3'- -UGG-GCCCGG------CUCCUCGCCUCCgcAGa -5'
30606 5' -65 NC_006549.1 + 99767 0.68 0.403186
Target:  5'- gACCuCGGGCUucggggGAGGGGUGGAGGacUCg -3'
miRNA:   3'- -UGG-GCCCGG------CUCCUCGCCUCCgcAGa -5'
30606 5' -65 NC_006549.1 + 99704 0.68 0.403186
Target:  5'- gACCuCGGGCUucggggGAGGGGUGGAGGacUCg -3'
miRNA:   3'- -UGG-GCCCGG------CUCCUCGCCUCCgcAGa -5'
30606 5' -65 NC_006549.1 + 99641 0.68 0.403186
Target:  5'- gACCuCGGGCUucggggGAGGGGUGGAGGacUCg -3'
miRNA:   3'- -UGG-GCCCGG------CUCCUCGCCUCCgcAGa -5'
30606 5' -65 NC_006549.1 + 77222 1.06 0.000772
Target:  5'- uACCCGGGCCGAGGAGCGGAGGCGUCUc -3'
miRNA:   3'- -UGGGCCCGGCUCCUCGCCUCCGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.