Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30609 | 3' | -49.3 | NC_006549.1 | + | 81063 | 1.17 | 0.00409 |
Target: 5'- cGCAAAGGCCCGAGAAAAUCGUUGCCCg -3' miRNA: 3'- -CGUUUCCGGGCUCUUUUAGCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 99998 | 0.81 | 0.522076 |
Target: 5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3' miRNA: 3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 100187 | 0.81 | 0.522076 |
Target: 5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3' miRNA: 3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 100124 | 0.81 | 0.522076 |
Target: 5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3' miRNA: 3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 100061 | 0.81 | 0.522076 |
Target: 5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3' miRNA: 3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 99935 | 0.81 | 0.522076 |
Target: 5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3' miRNA: 3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 99872 | 0.81 | 0.522076 |
Target: 5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3' miRNA: 3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 99809 | 0.81 | 0.522076 |
Target: 5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3' miRNA: 3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 99746 | 0.81 | 0.522076 |
Target: 5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3' miRNA: 3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 99683 | 0.81 | 0.522076 |
Target: 5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3' miRNA: 3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 99620 | 0.81 | 0.522076 |
Target: 5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3' miRNA: 3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 100249 | 0.81 | 0.522076 |
Target: 5'- gGUGGAGGaCUCGGGAGAGguccCGUUGCCCu -3' miRNA: 3'- -CGUUUCC-GGGCUCUUUUa---GCAACGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 41134 | 0.79 | 0.627847 |
Target: 5'- cUAGGGGCCCGAGAGGAccuaUCG--GCCCc -3' miRNA: 3'- cGUUUCCGGGCUCUUUU----AGCaaCGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 6748 | 0.75 | 0.793313 |
Target: 5'- cGCAAGGGCCCGAcGGAGAcaaggGUCCa -3' miRNA: 3'- -CGUUUCCGGGCU-CUUUUagcaaCGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 49724 | 0.73 | 0.89328 |
Target: 5'- cGC--GGGCCCGuGggGccCGUUGgCCCg -3' miRNA: 3'- -CGuuUCCGGGCuCuuUuaGCAAC-GGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 102598 | 0.72 | 0.919101 |
Target: 5'- cCGGGGuGCCCGGGAGGAccucUCGg-GCCCc -3' miRNA: 3'- cGUUUC-CGGGCUCUUUU----AGCaaCGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 49861 | 0.72 | 0.924905 |
Target: 5'- cCGGGGGCCCaGGGggGccCGgagGCCCu -3' miRNA: 3'- cGUUUCCGGG-CUCuuUuaGCaa-CGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 41824 | 0.71 | 0.945498 |
Target: 5'- gGCGccGGGCCCGAGAGGGccCGcggGUCCa -3' miRNA: 3'- -CGUu-UCCGGGCUCUUUUa-GCaa-CGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 7949 | 0.7 | 0.961982 |
Target: 5'- cGCGGAGcGCCCGgacccgauGGGGAGcCGggGCCUg -3' miRNA: 3'- -CGUUUC-CGGGC--------UCUUUUaGCaaCGGG- -5' |
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30609 | 3' | -49.3 | NC_006549.1 | + | 74843 | 0.7 | 0.971811 |
Target: 5'- -gGAAGGCCCGGGuggcuAAUCacUGCCg -3' miRNA: 3'- cgUUUCCGGGCUCuu---UUAGcaACGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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