miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30609 5' -57.1 NC_006549.1 + 50974 0.66 0.881894
Target:  5'- aGGGGC--CCAUgGggcCCUuCGGGCCu -3'
miRNA:   3'- aCCCUGauGGUGgCau-GGAuGCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 41827 0.66 0.874836
Target:  5'- gGGGGC-GCCGggcCCGagaggGCCcGCGGGUCc -3'
miRNA:   3'- aCCCUGaUGGU---GGCa----UGGaUGCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 49679 0.66 0.874836
Target:  5'- cUGGGACcuugcggacCCACgGUGCCcuUGGGUCc -3'
miRNA:   3'- -ACCCUGau-------GGUGgCAUGGauGCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 50084 0.66 0.874836
Target:  5'- uUGGGucccugcucuccGCUGUCAcCCGUGgguCCUACGGGaCCu -3'
miRNA:   3'- -ACCC------------UGAUGGU-GGCAU---GGAUGCCC-GG- -5'
30609 5' -57.1 NC_006549.1 + 2801 0.66 0.852406
Target:  5'- aUGGGGCaguuuUCGCCGUAuaucCCcgUGGGCCu -3'
miRNA:   3'- -ACCCUGau---GGUGGCAU----GGauGCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 91148 0.66 0.852406
Target:  5'- ---cGCUACCAagGUcCCUAUGGGCCc -3'
miRNA:   3'- acccUGAUGGUggCAuGGAUGCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 36482 0.67 0.828217
Target:  5'- aGGGACcccGCUACCaaccccUCUACGGGCa -3'
miRNA:   3'- aCCCUGa--UGGUGGcau---GGAUGCCCGg -5'
30609 5' -57.1 NC_006549.1 + 52629 0.67 0.802456
Target:  5'- aGGGAgCUcGCCGauccguCCGUGCCgcucgACGGGUUu -3'
miRNA:   3'- aCCCU-GA-UGGU------GGCAUGGa----UGCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 7075 0.67 0.793556
Target:  5'- cGGGuc--CCACCGgACCcgcCGGGCCc -3'
miRNA:   3'- aCCCugauGGUGGCaUGGau-GCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 82824 0.68 0.756614
Target:  5'- cGGGA--GCCGgCGcUGCCggaGCGGGCUu -3'
miRNA:   3'- aCCCUgaUGGUgGC-AUGGa--UGCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 41150 0.68 0.747087
Target:  5'- aUGGGuc--CCACgGgACCUAgGGGCCc -3'
miRNA:   3'- -ACCCugauGGUGgCaUGGAUgCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 7444 0.69 0.727745
Target:  5'- cGGGuGCUAacggCACCGUuCCUGgcuaccCGGGCCc -3'
miRNA:   3'- aCCC-UGAUg---GUGGCAuGGAU------GCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 50456 0.7 0.647846
Target:  5'- aUGGGACccacuggccCCGCCGgACCgGCGgGGCCc -3'
miRNA:   3'- -ACCCUGau-------GGUGGCaUGGaUGC-CCGG- -5'
30609 5' -57.1 NC_006549.1 + 83638 0.71 0.616439
Target:  5'- cGGG-UUACCguugggcGCCGgguuuCUUGCGGGCCg -3'
miRNA:   3'- aCCCuGAUGG-------UGGCau---GGAUGCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 40523 0.71 0.607332
Target:  5'- aUGGGACccccugGCC-CCGUaggACCcACGGGUCc -3'
miRNA:   3'- -ACCCUGa-----UGGuGGCA---UGGaUGCCCGG- -5'
30609 5' -57.1 NC_006549.1 + 74474 0.73 0.507246
Target:  5'- aGaGGACUGCCcagguucggGCCGUACUUguggcucACGGGCa -3'
miRNA:   3'- aC-CCUGAUGG---------UGGCAUGGA-------UGCCCGg -5'
30609 5' -57.1 NC_006549.1 + 81025 1.11 0.001797
Target:  5'- cUGGGACUACCACCGUACCUACGGGCCc -3'
miRNA:   3'- -ACCCUGAUGGUGGCAUGGAUGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.