miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3061 3' -56.1 NC_001493.1 + 9713 0.66 0.904567
Target:  5'- cCGCGu-GGUaGGCCGUgaGCCCgGAGa -3'
miRNA:   3'- uGCGCuuUCG-CUGGCAgaUGGGgCUC- -5'
3061 3' -56.1 NC_001493.1 + 28384 0.66 0.898218
Target:  5'- --aUGAAAGgGAUCGUCUGCUcgcgaCCGGGg -3'
miRNA:   3'- ugcGCUUUCgCUGGCAGAUGG-----GGCUC- -5'
3061 3' -56.1 NC_001493.1 + 92868 0.66 0.89757
Target:  5'- uACGUGAcGGUgacacacGACCGUgaGCUCCGGGc -3'
miRNA:   3'- -UGCGCUuUCG-------CUGGCAgaUGGGGCUC- -5'
3061 3' -56.1 NC_001493.1 + 44061 0.66 0.894297
Target:  5'- aACGCGAAgcgcaccguggugacGGCcccucaGACCGUCgcgGCCCagGAGu -3'
miRNA:   3'- -UGCGCUU---------------UCG------CUGGCAGa--UGGGg-CUC- -5'
3061 3' -56.1 NC_001493.1 + 101618 0.66 0.890966
Target:  5'- gUGUGGGAGC-ACgGUCUcaccaucGCCCCGAa -3'
miRNA:   3'- uGCGCUUUCGcUGgCAGA-------UGGGGCUc -5'
3061 3' -56.1 NC_001493.1 + 20912 0.66 0.884136
Target:  5'- cCGCGGGAGCGuACCcgccguagaccaaGUCgaugGCCuuGAGc -3'
miRNA:   3'- uGCGCUUUCGC-UGG-------------CAGa---UGGggCUC- -5'
3061 3' -56.1 NC_001493.1 + 123911 0.66 0.877797
Target:  5'- cGCGCGucucgccCGACCGUCcucacGCCCgCGAGc -3'
miRNA:   3'- -UGCGCuuuc---GCUGGCAGa----UGGG-GCUC- -5'
3061 3' -56.1 NC_001493.1 + 8357 0.66 0.877797
Target:  5'- cGCGCGucucgccCGACCGUCcucacGCCCgCGAGc -3'
miRNA:   3'- -UGCGCuuuc---GCUGGCAGa----UGGG-GCUC- -5'
3061 3' -56.1 NC_001493.1 + 90525 0.67 0.870547
Target:  5'- uCGCGAuauGCGAUCGUCacggcGCCCCc-- -3'
miRNA:   3'- uGCGCUuu-CGCUGGCAGa----UGGGGcuc -5'
3061 3' -56.1 NC_001493.1 + 87970 0.67 0.870547
Target:  5'- gGCGUacGAGgaGCCGgaUCUACCCCGGGa -3'
miRNA:   3'- -UGCGcuUUCgcUGGC--AGAUGGGGCUC- -5'
3061 3' -56.1 NC_001493.1 + 1311 0.67 0.863083
Target:  5'- cCGCGGAAGCGggcACCG-CggugACUCCGGa -3'
miRNA:   3'- uGCGCUUUCGC---UGGCaGa---UGGGGCUc -5'
3061 3' -56.1 NC_001493.1 + 32757 0.67 0.863083
Target:  5'- uGCGCGggGGgG-UCGUgacCCCCGAGu -3'
miRNA:   3'- -UGCGCuuUCgCuGGCAgauGGGGCUC- -5'
3061 3' -56.1 NC_001493.1 + 116865 0.67 0.863083
Target:  5'- cCGCGGAAGCGggcACCG-CggugACUCCGGa -3'
miRNA:   3'- uGCGCUUUCGC---UGGCaGa---UGGGGCUc -5'
3061 3' -56.1 NC_001493.1 + 124675 0.67 0.855412
Target:  5'- cCGCGggGucauccccGCGACCG-CgcUCCCGGGg -3'
miRNA:   3'- uGCGCuuU--------CGCUGGCaGauGGGGCUC- -5'
3061 3' -56.1 NC_001493.1 + 9120 0.67 0.855412
Target:  5'- cCGCGggGucauccccGCGACCG-CgcUCCCGGGg -3'
miRNA:   3'- uGCGCuuU--------CGCUGGCaGauGGGGCUC- -5'
3061 3' -56.1 NC_001493.1 + 34459 0.68 0.822774
Target:  5'- uCGCGAGGaCGGCCGUCUauAUCUgGAGc -3'
miRNA:   3'- uGCGCUUUcGCUGGCAGA--UGGGgCUC- -5'
3061 3' -56.1 NC_001493.1 + 18642 0.68 0.814163
Target:  5'- cCGCGucGAGCGACCcgaGUCUcACCCCc-- -3'
miRNA:   3'- uGCGCu-UUCGCUGG---CAGA-UGGGGcuc -5'
3061 3' -56.1 NC_001493.1 + 108461 0.68 0.805387
Target:  5'- uACGCGAgcGCGAUCGgUCUgucauGCCCCc-- -3'
miRNA:   3'- -UGCGCUuuCGCUGGC-AGA-----UGGGGcuc -5'
3061 3' -56.1 NC_001493.1 + 51668 0.68 0.796455
Target:  5'- cACGUGAAucuaacaucGGUGACCaUCU-CCCCGAc -3'
miRNA:   3'- -UGCGCUU---------UCGCUGGcAGAuGGGGCUc -5'
3061 3' -56.1 NC_001493.1 + 133164 0.68 0.787374
Target:  5'- cCGCGuu-GCGGCCccg-ACCCCGGGa -3'
miRNA:   3'- uGCGCuuuCGCUGGcagaUGGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.