miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3061 5' -50.8 NC_001493.1 + 61074 0.66 0.991
Target:  5'- cGGCUCCGacGAUGAgcuugaUCUCcUCGGUGg -3'
miRNA:   3'- -CUGAGGUcaCUGCUaa----AGAG-AGCCAC- -5'
3061 5' -50.8 NC_001493.1 + 101248 0.66 0.988259
Target:  5'- gGGC-CguGUGAUugagUCUCUCGGUGa -3'
miRNA:   3'- -CUGaGguCACUGcuaaAGAGAGCCAC- -5'
3061 5' -50.8 NC_001493.1 + 64584 0.66 0.986666
Target:  5'- cGCgCCcGUGGCGAguacaUCUCGGUGu -3'
miRNA:   3'- cUGaGGuCACUGCUaaag-AGAGCCAC- -5'
3061 5' -50.8 NC_001493.1 + 42149 0.67 0.984912
Target:  5'- -uCUCgAGUGgucACGGUgUCUCUCGGg- -3'
miRNA:   3'- cuGAGgUCAC---UGCUAaAGAGAGCCac -5'
3061 5' -50.8 NC_001493.1 + 95322 0.67 0.982987
Target:  5'- cGugUCgGGUGACGAUUUCgacgUGGg- -3'
miRNA:   3'- -CugAGgUCACUGCUAAAGaga-GCCac -5'
3061 5' -50.8 NC_001493.1 + 1106 0.67 0.980882
Target:  5'- cGACUCCAGUGACGAagaggucaUUUCcaagCccCGGg- -3'
miRNA:   3'- -CUGAGGUCACUGCU--------AAAGa---Ga-GCCac -5'
3061 5' -50.8 NC_001493.1 + 116660 0.67 0.980882
Target:  5'- cGACUCCAGUGACGAagaggucaUUUCcaagCccCGGg- -3'
miRNA:   3'- -CUGAGGUCACUGCU--------AAAGa---Ga-GCCac -5'
3061 5' -50.8 NC_001493.1 + 128825 0.67 0.978589
Target:  5'- gGGCUCCAGUcuCGGgaUCUCUCG-UGg -3'
miRNA:   3'- -CUGAGGUCAcuGCUaaAGAGAGCcAC- -5'
3061 5' -50.8 NC_001493.1 + 13271 0.67 0.978589
Target:  5'- gGGCUCCAGUcuCGGgaUCUCUCG-UGg -3'
miRNA:   3'- -CUGAGGUCAcuGCUaaAGAGAGCcAC- -5'
3061 5' -50.8 NC_001493.1 + 58195 0.68 0.96736
Target:  5'- cGCUCCGGUGAUGAccaccccgagUCUCaCGGUc -3'
miRNA:   3'- cUGAGGUCACUGCUaa--------AGAGaGCCAc -5'
3061 5' -50.8 NC_001493.1 + 65737 0.72 0.835731
Target:  5'- -uCUCCAGUaaccgcacaaACGAUUUCUCUCGGg- -3'
miRNA:   3'- cuGAGGUCAc---------UGCUAAAGAGAGCCac -5'
3061 5' -50.8 NC_001493.1 + 43025 1.1 0.007429
Target:  5'- uGACUCCAGUGACGAUUUCUCUCGGUGg -3'
miRNA:   3'- -CUGAGGUCACUGCUAAAGAGAGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.