Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30612 | 3' | -54.6 | NC_006549.1 | + | 24965 | 0.66 | 0.937166 |
Target: 5'- gGACGgaACGUUacGCGCGGCUCucgGCAaGCa -3' miRNA: 3'- gCUGC--UGCGAa-CGCGUCGAG---CGUaUG- -5' |
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30612 | 3' | -54.6 | NC_006549.1 | + | 22547 | 0.66 | 0.937166 |
Target: 5'- uCGuuGGcCGUgaccUGCGCGGUUCGCAaaUACg -3' miRNA: 3'- -GCugCU-GCGa---ACGCGUCGAGCGU--AUG- -5' |
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30612 | 3' | -54.6 | NC_006549.1 | + | 6167 | 0.66 | 0.932111 |
Target: 5'- cCGGCGGCGCUg--GCGGCUUuuaGCAa-- -3' miRNA: 3'- -GCUGCUGCGAacgCGUCGAG---CGUaug -5' |
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30612 | 3' | -54.6 | NC_006549.1 | + | 22868 | 0.66 | 0.915456 |
Target: 5'- aCGGCuACGCUccucGCGCGcGC-CGUAUACg -3' miRNA: 3'- -GCUGcUGCGAa---CGCGU-CGaGCGUAUG- -5' |
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30612 | 3' | -54.6 | NC_006549.1 | + | 128221 | 0.67 | 0.889809 |
Target: 5'- -aACGugGCUcGCGCAGUcuauggCGuCGUACg -3' miRNA: 3'- gcUGCugCGAaCGCGUCGa-----GC-GUAUG- -5' |
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30612 | 3' | -54.6 | NC_006549.1 | + | 60461 | 0.69 | 0.827585 |
Target: 5'- gCGACGGCGUUgGCGguGUgCGCcgAUa -3' miRNA: 3'- -GCUGCUGCGAaCGCguCGaGCGuaUG- -5' |
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30612 | 3' | -54.6 | NC_006549.1 | + | 88491 | 0.7 | 0.743815 |
Target: 5'- gGACGaACGUUUGCGCAGCgaaaCGgaagaAUGCu -3' miRNA: 3'- gCUGC-UGCGAACGCGUCGa---GCg----UAUG- -5' |
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30612 | 3' | -54.6 | NC_006549.1 | + | 97364 | 1.11 | 0.00258 |
Target: 5'- cCGACGACGCUUGCGCAGCUCGCAUACg -3' miRNA: 3'- -GCUGCUGCGAACGCGUCGAGCGUAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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