miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30613 5' -66.4 NC_006549.1 + 50804 0.66 0.436525
Target:  5'- cCCuuGGGUCCUgGCGGGCCCgcUGGGcCu -3'
miRNA:   3'- -GGccCCCGGGA-CGUCCGGG--ACCCuGu -5'
30613 5' -66.4 NC_006549.1 + 119680 0.67 0.387561
Target:  5'- -gGGGGGUUCUGUAGGCaUCgGGGuGCGu -3'
miRNA:   3'- ggCCCCCGGGACGUCCG-GGaCCC-UGU- -5'
30613 5' -66.4 NC_006549.1 + 50894 0.67 0.372061
Target:  5'- cCUGuGGGUCCUcugGGGCCUUGGGACc -3'
miRNA:   3'- -GGCcCCCGGGAcg-UCCGGGACCCUGu -5'
30613 5' -66.4 NC_006549.1 + 40949 0.67 0.356989
Target:  5'- cCUGGgcucacGGGCCCccCGGGCCCgaUGGGGCc -3'
miRNA:   3'- -GGCC------CCCGGGacGUCCGGG--ACCCUGu -5'
30613 5' -66.4 NC_006549.1 + 7530 0.67 0.349616
Target:  5'- cCCGGuGGGCCCUcagGGGCCagaGGGAg- -3'
miRNA:   3'- -GGCC-CCCGGGAcg-UCCGGga-CCCUgu -5'
30613 5' -66.4 NC_006549.1 + 7058 0.68 0.330955
Target:  5'- gCCGGGcccgccggaccccgcGGaCCCcGCGGGCCCgcgGGGGu- -3'
miRNA:   3'- -GGCCC---------------CC-GGGaCGUCCGGGa--CCCUgu -5'
30613 5' -66.4 NC_006549.1 + 50492 0.68 0.328151
Target:  5'- gCCGGGccaucuGGCCCcGCGGGgCCaacgaggccaaUGGGACc -3'
miRNA:   3'- -GGCCC------CCGGGaCGUCCgGG-----------ACCCUGu -5'
30613 5' -66.4 NC_006549.1 + 51004 0.68 0.299112
Target:  5'- cCCGGGGcCCCUuaggGCcgaucggcccuaagGGGCCCaUGGGGCc -3'
miRNA:   3'- -GGCCCCcGGGA----CG--------------UCCGGG-ACCCUGu -5'
30613 5' -66.4 NC_006549.1 + 41830 0.69 0.294577
Target:  5'- cCCGGGGGCgCCggGCccgagaGGGCCCgcGGGucCAu -3'
miRNA:   3'- -GGCCCCCG-GGa-CG------UCCGGGa-CCCu-GU- -5'
30613 5' -66.4 NC_006549.1 + 7726 0.69 0.294577
Target:  5'- cCCaGGGGCCCagGgGGGCCgaUGGGccGCAg -3'
miRNA:   3'- -GGcCCCCGGGa-CgUCCGGg-ACCC--UGU- -5'
30613 5' -66.4 NC_006549.1 + 102599 0.69 0.29201
Target:  5'- uCCGGGGuGCCCgggaggaccucuCGGGcCCCUGGGucCAg -3'
miRNA:   3'- -GGCCCC-CGGGac----------GUCC-GGGACCCu-GU- -5'
30613 5' -66.4 NC_006549.1 + 41409 0.7 0.246528
Target:  5'- cCCGcGGGCCCcGUugggccaaaaGGGCCCagcgGGGACGa -3'
miRNA:   3'- -GGCcCCCGGGaCG----------UCCGGGa---CCCUGU- -5'
30613 5' -66.4 NC_006549.1 + 6954 0.7 0.230257
Target:  5'- cCCaGaGGGUCCUGCGGGUCCcaUGGGuACu -3'
miRNA:   3'- -GGcC-CCCGGGACGUCCGGG--ACCC-UGu -5'
30613 5' -66.4 NC_006549.1 + 49718 0.71 0.205159
Target:  5'- cCCGuGGGGCCCguugGCccgcgAGGucccgcuugacCCCUGGGACc -3'
miRNA:   3'- -GGC-CCCCGGGa---CG-----UCC-----------GGGACCCUGu -5'
30613 5' -66.4 NC_006549.1 + 41694 0.71 0.195343
Target:  5'- cCCGGccccccuGGGCCC-GCGGGCCCagcaGGaGACAa -3'
miRNA:   3'- -GGCC-------CCCGGGaCGUCCGGGa---CC-CUGU- -5'
30613 5' -66.4 NC_006549.1 + 49808 0.72 0.178201
Target:  5'- cCCGuGGGCCCaGCuGGGCCCacGGGACc -3'
miRNA:   3'- -GGCcCCCGGGaCG-UCCGGGa-CCCUGu -5'
30613 5' -66.4 NC_006549.1 + 102128 0.73 0.158186
Target:  5'- cCUGGGGGgCCaGgAGGUCCUGGGGg- -3'
miRNA:   3'- -GGCCCCCgGGaCgUCCGGGACCCUgu -5'
30613 5' -66.4 NC_006549.1 + 49862 0.76 0.087812
Target:  5'- cCCGGGGGCCCagGgGGGCCC-GGaGGCc -3'
miRNA:   3'- -GGCCCCCGGGa-CgUCCGGGaCC-CUGu -5'
30613 5' -66.4 NC_006549.1 + 101918 1.08 0.000349
Target:  5'- cCCGGGGGCCCUGCAGGCCCUGGGACAc -3'
miRNA:   3'- -GGCCCCCGGGACGUCCGGGACCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.