miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30615 3' -49.4 NC_006549.1 + 68447 0.66 0.997945
Target:  5'- cCAcGGCGUUCGa------GCGCGCCg -3'
miRNA:   3'- aGUuUCGCAAGCggcaaaaCGUGCGG- -5'
30615 3' -49.4 NC_006549.1 + 72485 0.66 0.997945
Target:  5'- uUUAAAGCGUuggguguaaagaUUGuaGUUUUGacaaACGCCg -3'
miRNA:   3'- -AGUUUCGCA------------AGCggCAAAACg---UGCGG- -5'
30615 3' -49.4 NC_006549.1 + 131688 0.66 0.997544
Target:  5'- gCGAGGCGggCGgaGUgaaaGCGCGCUc -3'
miRNA:   3'- aGUUUCGCaaGCggCAaaa-CGUGCGG- -5'
30615 3' -49.4 NC_006549.1 + 46624 0.66 0.996547
Target:  5'- cUggGGUGuUUCGCCGUgaaaaugaGUACGCa -3'
miRNA:   3'- aGuuUCGC-AAGCGGCAaaa-----CGUGCGg -5'
30615 3' -49.4 NC_006549.1 + 22703 0.67 0.995237
Target:  5'- aCGGAGU--UCGCCGaacUGCGCGUa -3'
miRNA:   3'- aGUUUCGcaAGCGGCaaaACGUGCGg -5'
30615 3' -49.4 NC_006549.1 + 72529 0.67 0.995237
Target:  5'- aCGAAGgGcacacCGCCGc---GCGCGCCa -3'
miRNA:   3'- aGUUUCgCaa---GCGGCaaaaCGUGCGG- -5'
30615 3' -49.4 NC_006549.1 + 60472 0.68 0.991413
Target:  5'- cCGAGGCGccCGCgacggCGUUggcggUGUGCGCCg -3'
miRNA:   3'- aGUUUCGCaaGCG-----GCAAa----ACGUGCGG- -5'
30615 3' -49.4 NC_006549.1 + 21061 0.68 0.991413
Target:  5'- ---cAGUauuUUCGCCGgUUUGCACgGCCg -3'
miRNA:   3'- aguuUCGc--AAGCGGCaAAACGUG-CGG- -5'
30615 3' -49.4 NC_006549.1 + 5898 0.68 0.988753
Target:  5'- gUCGGAGCuGUcuugaaacgUGCUGgccUGCGCGCCa -3'
miRNA:   3'- -AGUUUCG-CAa--------GCGGCaaaACGUGCGG- -5'
30615 3' -49.4 NC_006549.1 + 119664 0.7 0.971354
Target:  5'- aUCGGGGUG--CGUagaguacgCGUUUUGCAUGCCg -3'
miRNA:   3'- -AGUUUCGCaaGCG--------GCAAAACGUGCGG- -5'
30615 3' -49.4 NC_006549.1 + 29858 0.7 0.96827
Target:  5'- gUCGuuuuAGCGaUCGCUGUUUUGgCgaaaacagaauGCGCCg -3'
miRNA:   3'- -AGUu---UCGCaAGCGGCAAAAC-G-----------UGCGG- -5'
30615 3' -49.4 NC_006549.1 + 30528 0.7 0.957228
Target:  5'- gUCAucGuCGUgauugucUUGCUuuuGUUUUGCACGCCg -3'
miRNA:   3'- -AGUuuC-GCA-------AGCGG---CAAAACGUGCGG- -5'
30615 3' -49.4 NC_006549.1 + 2700 0.71 0.953585
Target:  5'- uUCGgcGCGUUCcuuGCUGUgcgaGUACGCCa -3'
miRNA:   3'- -AGUuuCGCAAG---CGGCAaaa-CGUGCGG- -5'
30615 3' -49.4 NC_006549.1 + 106399 1.14 0.006091
Target:  5'- gUCAAAGCGUUCGCCGUUUUGCACGCCu -3'
miRNA:   3'- -AGUUUCGCAAGCGGCAAAACGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.