Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30615 | 3' | -49.4 | NC_006549.1 | + | 68447 | 0.66 | 0.997945 |
Target: 5'- cCAcGGCGUUCGa------GCGCGCCg -3' miRNA: 3'- aGUuUCGCAAGCggcaaaaCGUGCGG- -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 2700 | 0.71 | 0.953585 |
Target: 5'- uUCGgcGCGUUCcuuGCUGUgcgaGUACGCCa -3' miRNA: 3'- -AGUuuCGCAAG---CGGCAaaa-CGUGCGG- -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 30528 | 0.7 | 0.957228 |
Target: 5'- gUCAucGuCGUgauugucUUGCUuuuGUUUUGCACGCCg -3' miRNA: 3'- -AGUuuC-GCA-------AGCGG---CAAAACGUGCGG- -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 29858 | 0.7 | 0.96827 |
Target: 5'- gUCGuuuuAGCGaUCGCUGUUUUGgCgaaaacagaauGCGCCg -3' miRNA: 3'- -AGUu---UCGCaAGCGGCAAAAC-G-----------UGCGG- -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 119664 | 0.7 | 0.971354 |
Target: 5'- aUCGGGGUG--CGUagaguacgCGUUUUGCAUGCCg -3' miRNA: 3'- -AGUUUCGCaaGCG--------GCAAAACGUGCGG- -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 5898 | 0.68 | 0.988753 |
Target: 5'- gUCGGAGCuGUcuugaaacgUGCUGgccUGCGCGCCa -3' miRNA: 3'- -AGUUUCG-CAa--------GCGGCaaaACGUGCGG- -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 60472 | 0.68 | 0.991413 |
Target: 5'- cCGAGGCGccCGCgacggCGUUggcggUGUGCGCCg -3' miRNA: 3'- aGUUUCGCaaGCG-----GCAAa----ACGUGCGG- -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 21061 | 0.68 | 0.991413 |
Target: 5'- ---cAGUauuUUCGCCGgUUUGCACgGCCg -3' miRNA: 3'- aguuUCGc--AAGCGGCaAAACGUG-CGG- -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 72529 | 0.67 | 0.995237 |
Target: 5'- aCGAAGgGcacacCGCCGc---GCGCGCCa -3' miRNA: 3'- aGUUUCgCaa---GCGGCaaaaCGUGCGG- -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 22703 | 0.67 | 0.995237 |
Target: 5'- aCGGAGU--UCGCCGaacUGCGCGUa -3' miRNA: 3'- aGUUUCGcaAGCGGCaaaACGUGCGg -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 46624 | 0.66 | 0.996547 |
Target: 5'- cUggGGUGuUUCGCCGUgaaaaugaGUACGCa -3' miRNA: 3'- aGuuUCGC-AAGCGGCAaaa-----CGUGCGg -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 72485 | 0.66 | 0.997945 |
Target: 5'- uUUAAAGCGUuggguguaaagaUUGuaGUUUUGacaaACGCCg -3' miRNA: 3'- -AGUUUCGCA------------AGCggCAAAACg---UGCGG- -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 131688 | 0.66 | 0.997544 |
Target: 5'- gCGAGGCGggCGgaGUgaaaGCGCGCUc -3' miRNA: 3'- aGUUUCGCaaGCggCAaaa-CGUGCGG- -5' |
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30615 | 3' | -49.4 | NC_006549.1 | + | 106399 | 1.14 | 0.006091 |
Target: 5'- gUCAAAGCGUUCGCCGUUUUGCACGCCu -3' miRNA: 3'- -AGUUUCGCAAGCGGCAAAACGUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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