miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30615 5' -47.5 NC_006549.1 + 74310 0.66 0.999768
Target:  5'- uCUGAUAaACGAcauuaGAUGGCGCCcg-GCUc -3'
miRNA:   3'- -GGCUAUaUGUU-----UUACCGCGGaugCGA- -5'
30615 5' -47.5 NC_006549.1 + 105390 0.66 0.999624
Target:  5'- uUCGuUGUuccGCAGAAUGcGCGUCUaACGCg -3'
miRNA:   3'- -GGCuAUA---UGUUUUAC-CGCGGA-UGCGa -5'
30615 5' -47.5 NC_006549.1 + 112154 0.66 0.999527
Target:  5'- uCCGAUuugGCAGuua-GCGCgUACGCg -3'
miRNA:   3'- -GGCUAua-UGUUuuacCGCGgAUGCGa -5'
30615 5' -47.5 NC_006549.1 + 22263 0.66 0.999408
Target:  5'- aCCGAgagAUGCAGuacgucacGGCGUCU-CGCa -3'
miRNA:   3'- -GGCUa--UAUGUUuua-----CCGCGGAuGCGa -5'
30615 5' -47.5 NC_006549.1 + 20322 0.67 0.999265
Target:  5'- aCGAUAUAacUAAAAUGGacuacaCGCCUcaaaACGCa -3'
miRNA:   3'- gGCUAUAU--GUUUUACC------GCGGA----UGCGa -5'
30615 5' -47.5 NC_006549.1 + 109179 0.67 0.999265
Target:  5'- aCGGUAUGCAAAAU----CCUACGCa -3'
miRNA:   3'- gGCUAUAUGUUUUAccgcGGAUGCGa -5'
30615 5' -47.5 NC_006549.1 + 83574 0.67 0.999265
Target:  5'- aCCGGUAUGguGGGggggGGCGCCcuggccaugggaUACGUc -3'
miRNA:   3'- -GGCUAUAUguUUUa---CCGCGG------------AUGCGa -5'
30615 5' -47.5 NC_006549.1 + 117036 0.67 0.998642
Target:  5'- aCGGUGUugA-GGUGGCGCCccCGUc -3'
miRNA:   3'- gGCUAUAugUuUUACCGCGGauGCGa -5'
30615 5' -47.5 NC_006549.1 + 113471 0.68 0.997618
Target:  5'- -gGAUAggcuccacUACGug--GGCGCCUACGUa -3'
miRNA:   3'- ggCUAU--------AUGUuuuaCCGCGGAUGCGa -5'
30615 5' -47.5 NC_006549.1 + 135100 0.68 0.997159
Target:  5'- gCCGccg-ACAugGUGGagcuCGCCUACGCg -3'
miRNA:   3'- -GGCuauaUGUuuUACC----GCGGAUGCGa -5'
30615 5' -47.5 NC_006549.1 + 127861 0.69 0.992615
Target:  5'- aCGAUG-ACGGcg-GGCGCUUACGUa -3'
miRNA:   3'- gGCUAUaUGUUuuaCCGCGGAUGCGa -5'
30615 5' -47.5 NC_006549.1 + 134115 0.69 0.992615
Target:  5'- gUGGUGaacGCAGuguuuAUGGUGUCUACGCUa -3'
miRNA:   3'- gGCUAUa--UGUUu----UACCGCGGAUGCGA- -5'
30615 5' -47.5 NC_006549.1 + 120188 0.7 0.987217
Target:  5'- gCGGgucACGAAGggcUGGCGCCcGCGCUu -3'
miRNA:   3'- gGCUauaUGUUUU---ACCGCGGaUGCGA- -5'
30615 5' -47.5 NC_006549.1 + 127621 0.71 0.983571
Target:  5'- aCCGAUuUGCAAAAUGGaGaaUACGCg -3'
miRNA:   3'- -GGCUAuAUGUUUUACCgCggAUGCGa -5'
30615 5' -47.5 NC_006549.1 + 106364 1.12 0.01225
Target:  5'- cCCGAUAUACAAAAUGGCGCCUACGCUg -3'
miRNA:   3'- -GGCUAUAUGUUUUACCGCGGAUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.