miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30616 3' -46.2 NC_006549.1 + 131829 0.66 0.999884
Target:  5'- aAAAGUUUuucCGAAUCCgggaggacauuuaaGCAGGCAgugGCCCu -3'
miRNA:   3'- -UUUCAAA---GCUUAGG--------------CGUUUGU---UGGGc -5'
30616 3' -46.2 NC_006549.1 + 20446 0.67 0.999818
Target:  5'- -cGGUUcuagCGAcUCUGaCGAACAACCCu -3'
miRNA:   3'- uuUCAAa---GCUuAGGC-GUUUGUUGGGc -5'
30616 3' -46.2 NC_006549.1 + 106501 0.67 0.999764
Target:  5'- --uGUUUCGGcccGUCCGCcAAUucaggguGCCCGg -3'
miRNA:   3'- uuuCAAAGCU---UAGGCGuUUGu------UGGGC- -5'
30616 3' -46.2 NC_006549.1 + 79099 0.68 0.999061
Target:  5'- --uGUUUCGuuUCCGUAAACGAaaCGa -3'
miRNA:   3'- uuuCAAAGCuuAGGCGUUUGUUggGC- -5'
30616 3' -46.2 NC_006549.1 + 16590 0.68 0.999041
Target:  5'- cAAGUUcaacacaUCGAGUCUGUuugGAACAGCCUc -3'
miRNA:   3'- uUUCAA-------AGCUUAGGCG---UUUGUUGGGc -5'
30616 3' -46.2 NC_006549.1 + 139123 0.69 0.998588
Target:  5'- cAGAGUacgcaCGAAUCUugagagccagagGCGAACAGCCCa -3'
miRNA:   3'- -UUUCAaa---GCUUAGG------------CGUUUGUUGGGc -5'
30616 3' -46.2 NC_006549.1 + 68261 0.69 0.99737
Target:  5'- --cGUgUCGggUCCGguGgacgcccuuacucgACAGCCCGu -3'
miRNA:   3'- uuuCAaAGCuuAGGCguU--------------UGUUGGGC- -5'
30616 3' -46.2 NC_006549.1 + 75547 0.7 0.993278
Target:  5'- gAGAGcgUCaGAAUUCGC-AGCAACCCa -3'
miRNA:   3'- -UUUCaaAG-CUUAGGCGuUUGUUGGGc -5'
30616 3' -46.2 NC_006549.1 + 8858 0.72 0.984615
Target:  5'- -uGGUUUCGAGcCCGCuucGAGCGACgCGg -3'
miRNA:   3'- uuUCAAAGCUUaGGCG---UUUGUUGgGC- -5'
30616 3' -46.2 NC_006549.1 + 6765 0.72 0.982583
Target:  5'- uAAGGgacccgCGggUCCGCAAG-GGCCCGa -3'
miRNA:   3'- -UUUCaaa---GCuuAGGCGUUUgUUGGGC- -5'
30616 3' -46.2 NC_006549.1 + 108022 1.08 0.025202
Target:  5'- aAAAGUUUCGAAUCCGCAAACAACCCGa -3'
miRNA:   3'- -UUUCAAAGCUUAGGCGUUUGUUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.