Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30616 | 3' | -46.2 | NC_006549.1 | + | 6765 | 0.72 | 0.982583 |
Target: 5'- uAAGGgacccgCGggUCCGCAAG-GGCCCGa -3' miRNA: 3'- -UUUCaaa---GCuuAGGCGUUUgUUGGGC- -5' |
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30616 | 3' | -46.2 | NC_006549.1 | + | 8858 | 0.72 | 0.984615 |
Target: 5'- -uGGUUUCGAGcCCGCuucGAGCGACgCGg -3' miRNA: 3'- uuUCAAAGCUUaGGCG---UUUGUUGgGC- -5' |
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30616 | 3' | -46.2 | NC_006549.1 | + | 16590 | 0.68 | 0.999041 |
Target: 5'- cAAGUUcaacacaUCGAGUCUGUuugGAACAGCCUc -3' miRNA: 3'- uUUCAA-------AGCUUAGGCG---UUUGUUGGGc -5' |
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30616 | 3' | -46.2 | NC_006549.1 | + | 20446 | 0.67 | 0.999818 |
Target: 5'- -cGGUUcuagCGAcUCUGaCGAACAACCCu -3' miRNA: 3'- uuUCAAa---GCUuAGGC-GUUUGUUGGGc -5' |
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30616 | 3' | -46.2 | NC_006549.1 | + | 68261 | 0.69 | 0.99737 |
Target: 5'- --cGUgUCGggUCCGguGgacgcccuuacucgACAGCCCGu -3' miRNA: 3'- uuuCAaAGCuuAGGCguU--------------UGUUGGGC- -5' |
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30616 | 3' | -46.2 | NC_006549.1 | + | 75547 | 0.7 | 0.993278 |
Target: 5'- gAGAGcgUCaGAAUUCGC-AGCAACCCa -3' miRNA: 3'- -UUUCaaAG-CUUAGGCGuUUGUUGGGc -5' |
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30616 | 3' | -46.2 | NC_006549.1 | + | 79099 | 0.68 | 0.999061 |
Target: 5'- --uGUUUCGuuUCCGUAAACGAaaCGa -3' miRNA: 3'- uuuCAAAGCuuAGGCGUUUGUUggGC- -5' |
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30616 | 3' | -46.2 | NC_006549.1 | + | 106501 | 0.67 | 0.999764 |
Target: 5'- --uGUUUCGGcccGUCCGCcAAUucaggguGCCCGg -3' miRNA: 3'- uuuCAAAGCU---UAGGCGuUUGu------UGGGC- -5' |
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30616 | 3' | -46.2 | NC_006549.1 | + | 108022 | 1.08 | 0.025202 |
Target: 5'- aAAAGUUUCGAAUCCGCAAACAACCCGa -3' miRNA: 3'- -UUUCAAAGCUUAGGCGUUUGUUGGGC- -5' |
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30616 | 3' | -46.2 | NC_006549.1 | + | 131829 | 0.66 | 0.999884 |
Target: 5'- aAAAGUUUuucCGAAUCCgggaggacauuuaaGCAGGCAgugGCCCu -3' miRNA: 3'- -UUUCAAA---GCUUAGG--------------CGUUUGU---UGGGc -5' |
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30616 | 3' | -46.2 | NC_006549.1 | + | 139123 | 0.69 | 0.998588 |
Target: 5'- cAGAGUacgcaCGAAUCUugagagccagagGCGAACAGCCCa -3' miRNA: 3'- -UUUCAaa---GCUUAGG------------CGUUUGUUGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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