miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30617 5' -47.6 NC_006549.1 + 101994 0.66 0.999509
Target:  5'- gGGCcc---UGGUUGaccaguuucGCCcuGUGGGCCAGg -3'
miRNA:   3'- -CCGuuuuuACCAAU---------CGG--UAUCCGGUC- -5'
30617 5' -47.6 NC_006549.1 + 116605 0.66 0.999385
Target:  5'- cGGCuuGuuuuuccacAGUGGgucugAGCCuaucuuUGGGCCAGu -3'
miRNA:   3'- -CCGuuU---------UUACCaa---UCGGu-----AUCCGGUC- -5'
30617 5' -47.6 NC_006549.1 + 83662 0.66 0.999234
Target:  5'- aGCAGcgGUGGUacUGGCCAUaaucGGGUUAc -3'
miRNA:   3'- cCGUUuuUACCA--AUCGGUA----UCCGGUc -5'
30617 5' -47.6 NC_006549.1 + 7949 0.67 0.998837
Target:  5'- cGCGGAgcgcccggacccGAUGGggAGCCG-GGGCCuGa -3'
miRNA:   3'- cCGUUU------------UUACCaaUCGGUaUCCGGuC- -5'
30617 5' -47.6 NC_006549.1 + 21881 0.67 0.998277
Target:  5'- cGCAGAAucucccgUAGCCAagagggAGGCCAGa -3'
miRNA:   3'- cCGUUUUuacca--AUCGGUa-----UCCGGUC- -5'
30617 5' -47.6 NC_006549.1 + 97138 0.67 0.99792
Target:  5'- gGGCAAcaguacguGAGUGGc--GCC--AGGCCGGg -3'
miRNA:   3'- -CCGUU--------UUUACCaauCGGuaUCCGGUC- -5'
30617 5' -47.6 NC_006549.1 + 34019 0.68 0.994248
Target:  5'- cGGCG--GGUGGUUcGCCAcgaGGGCUAa -3'
miRNA:   3'- -CCGUuuUUACCAAuCGGUa--UCCGGUc -5'
30617 5' -47.6 NC_006549.1 + 41073 0.69 0.993301
Target:  5'- gGGCGAAAGUGGgcccgcUGGCCccacAGGaCCAu -3'
miRNA:   3'- -CCGUUUUUACCa-----AUCGGua--UCC-GGUc -5'
30617 5' -47.6 NC_006549.1 + 138886 0.69 0.991034
Target:  5'- uGGUAAAGAUGGUuuUGGCaacuccGCCAGa -3'
miRNA:   3'- -CCGUUUUUACCA--AUCGguauc-CGGUC- -5'
30617 5' -47.6 NC_006549.1 + 52657 0.71 0.966265
Target:  5'- cGCGGAGGaGGaUUGGUCcgcGUGGGCCAGg -3'
miRNA:   3'- cCGUUUUUaCC-AAUCGG---UAUCCGGUC- -5'
30617 5' -47.6 NC_006549.1 + 108465 1.12 0.010312
Target:  5'- uGGCAAAAAUGGUUAGCCAUAGGCCAGu -3'
miRNA:   3'- -CCGUUUUUACCAAUCGGUAUCCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.