Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30628 | 3' | -54.4 | NC_006549.1 | + | 30090 | 0.66 | 0.937956 |
Target: 5'- aCGCCGuaCCUAGgcAAAGCGCGcaagaagcGUACg -3' miRNA: 3'- gGCGGCcgGGGUU--UUUCGCGUa-------CAUG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 128336 | 0.72 | 0.653762 |
Target: 5'- aUCGCgCGGUCUCAuAAAAGCGCAcgUGUAa -3' miRNA: 3'- -GGCG-GCCGGGGU-UUUUCGCGU--ACAUg -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 11956 | 0.71 | 0.705386 |
Target: 5'- cCCGCUaGCCCCAGGAGGCcCAgagGCa -3' miRNA: 3'- -GGCGGcCGGGGUUUUUCGcGUacaUG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 12226 | 0.71 | 0.735665 |
Target: 5'- cCCGCUaGCCCCAGGAGGCcCAgagACa -3' miRNA: 3'- -GGCGGcCGGGGUUUUUCGcGUacaUG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 12172 | 0.71 | 0.735665 |
Target: 5'- cCCGCUaGCCCCAGGAGGCcCAgagACa -3' miRNA: 3'- -GGCGGcCGGGGUUUUUCGcGUacaUG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 12118 | 0.71 | 0.735665 |
Target: 5'- cCCGCUaGCCCCAGGAGGCcCAgagACa -3' miRNA: 3'- -GGCGGcCGGGGUUUUUCGcGUacaUG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 12064 | 0.71 | 0.735665 |
Target: 5'- cCCGCUaGCCCCAGGAGGCcCAgagACa -3' miRNA: 3'- -GGCGGcCGGGGUUUUUCGcGUacaUG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 12010 | 0.71 | 0.735665 |
Target: 5'- cCCGCUaGCCCCAGGAGGCcCAgagACa -3' miRNA: 3'- -GGCGGcCGGGGUUUUUCGcGUacaUG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 41823 | 0.7 | 0.784132 |
Target: 5'- gCGCCGGgCCCGAGAGGgccCGCggGUcCa -3' miRNA: 3'- gGCGGCCgGGGUUUUUC---GCGuaCAuG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 41060 | 0.69 | 0.832472 |
Target: 5'- cCCGCUGGCCCCAcaggaccauccGgcccgcaaggugacaGAGGCGCAa---- -3' miRNA: 3'- -GGCGGCCGGGGU-----------U---------------UUUCGCGUacaug -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 55358 | 0.69 | 0.837528 |
Target: 5'- uUGCCGGUgCCG---GGCGCGUGa-- -3' miRNA: 3'- gGCGGCCGgGGUuuuUCGCGUACaug -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 100700 | 0.69 | 0.837528 |
Target: 5'- -gGCUGGCgaCCAAAgcGCGCugGUGUGCc -3' miRNA: 3'- ggCGGCCGg-GGUUUuuCGCG--UACAUG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 41409 | 0.68 | 0.869369 |
Target: 5'- cCCGCgGGCCCCGuuGGGC-CAa---- -3' miRNA: 3'- -GGCGgCCGGGGUuuUUCGcGUacaug -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 2777 | 0.67 | 0.897685 |
Target: 5'- cCCGUgGGCCUCAGcGAGCag--GUGCg -3' miRNA: 3'- -GGCGgCCGGGGUUuUUCGcguaCAUG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 1205 | 0.67 | 0.902253 |
Target: 5'- gUGCUGGUgaCCGuuGAagaaaaaaugaacaGAGCGCAUGUGCa -3' miRNA: 3'- gGCGGCCGg-GGU--UU--------------UUCGCGUACAUG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 72518 | 0.67 | 0.916423 |
Target: 5'- aCCGCCGcGCgcgccacguuuCCCAu---GCGCGUGUu- -3' miRNA: 3'- -GGCGGC-CG-----------GGGUuuuuCGCGUACAug -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 40580 | 0.66 | 0.924411 |
Target: 5'- cCCGCCGGCUuaCCAgggaaaaaaggaauaAAGGGUGCGg--ACg -3' miRNA: 3'- -GGCGGCCGG--GGU---------------UUUUCGCGUacaUG- -5' |
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30628 | 3' | -54.4 | NC_006549.1 | + | 50988 | 0.73 | 0.612082 |
Target: 5'- gCCGaUCGGCCCUAAGGGGCcCAUGggGCc -3' miRNA: 3'- -GGC-GGCCGGGGUUUUUCGcGUACa-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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