Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30629 | 5' | -52.7 | NC_006549.1 | + | 59207 | 0.68 | 0.925373 |
Target: 5'- gGUGGCGUGgGgCGAagagggcUCCUggGugGCg -3' miRNA: 3'- gCGCCGCAUgCgGUU-------AGGGuuUugCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 59153 | 0.68 | 0.925373 |
Target: 5'- gGUGGCGUGgGgCGAagagggcUCCUggGugGCg -3' miRNA: 3'- gCGCCGCAUgCgGUU-------AGGGuuUugCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 59099 | 0.68 | 0.925373 |
Target: 5'- gGUGGCGUGgGgCGAagagggcUCCUggGugGCg -3' miRNA: 3'- gCGCCGCAUgCgGUU-------AGGGuuUugCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 59045 | 0.68 | 0.925373 |
Target: 5'- gGUGGCGUGgGgCGAagagggcUCCUggGugGCg -3' miRNA: 3'- gCGCCGCAUgCgGUU-------AGGGuuUugCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 40729 | 0.68 | 0.924269 |
Target: 5'- cCGuCGGCGcgagucACGUCGGUCCCGAGGgaaccccgggaccuCGCg -3' miRNA: 3'- -GC-GCCGCa-----UGCGGUUAGGGUUUU--------------GCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 51341 | 0.69 | 0.920326 |
Target: 5'- uGCGGCGUGgGCC-GUCC----ACGUg -3' miRNA: 3'- gCGCCGCAUgCGGuUAGGguuuUGCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 59938 | 0.69 | 0.914481 |
Target: 5'- gGCGGCGUACGag---CCUc-GACGCa -3' miRNA: 3'- gCGCCGCAUGCgguuaGGGuuUUGCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 79631 | 0.69 | 0.913883 |
Target: 5'- uCGUGGgGUcCGCCAccgGUCCCAucaaaaaGGAuCGCg -3' miRNA: 3'- -GCGCCgCAuGCGGU---UAGGGU-------UUU-GCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 64659 | 0.69 | 0.90839 |
Target: 5'- aCGCGGUcucccCGCUAGUCUgauUAGAACGCg -3' miRNA: 3'- -GCGCCGcau--GCGGUUAGG---GUUUUGCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 116949 | 0.69 | 0.90839 |
Target: 5'- aGCGGCGgGCGCguAUCU----GCGCa -3' miRNA: 3'- gCGCCGCaUGCGguUAGGguuuUGCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 130193 | 0.69 | 0.902053 |
Target: 5'- --aGGCGUGCGCCAGaugcUCggaCGAAACGg -3' miRNA: 3'- gcgCCGCAUGCGGUU----AGg--GUUUUGCg -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 11122 | 0.69 | 0.902053 |
Target: 5'- cCGUGGCGgaAC-CCAAaCCCAccaGGGCGCg -3' miRNA: 3'- -GCGCCGCa-UGcGGUUaGGGU---UUUGCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 83916 | 0.69 | 0.902053 |
Target: 5'- -aCGGCGUGCGUCAagcuGUCCguGGACa- -3' miRNA: 3'- gcGCCGCAUGCGGU----UAGGguUUUGcg -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 53317 | 0.7 | 0.851136 |
Target: 5'- aCGCGGCGcgcACGgCAGaCCCGAAGaggcCGCg -3' miRNA: 3'- -GCGCCGCa--UGCgGUUaGGGUUUU----GCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 98999 | 0.7 | 0.851136 |
Target: 5'- uGUGGCGcguugaGCGCgGcaCCCAAGGCGCc -3' miRNA: 3'- gCGCCGCa-----UGCGgUuaGGGUUUUGCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 134747 | 0.7 | 0.851136 |
Target: 5'- aGCGGgGUGCGCCA-UCCguAGuuaGCc -3' miRNA: 3'- gCGCCgCAUGCGGUuAGGguUUug-CG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 26823 | 0.71 | 0.826098 |
Target: 5'- -aCGGCGUACGCCGcgUaCAAAgauuuGCGCa -3' miRNA: 3'- gcGCCGCAUGCGGUuaGgGUUU-----UGCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 5595 | 0.72 | 0.799409 |
Target: 5'- -uUGGCGUACGCCGcgaGUCUCuccgggguGGCGCu -3' miRNA: 3'- gcGCCGCAUGCGGU---UAGGGuu------UUGCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 78316 | 0.72 | 0.799409 |
Target: 5'- aGCuGCcgGUGCGCCAGUUCCGccaugguGGCGCg -3' miRNA: 3'- gCGcCG--CAUGCGGUUAGGGUu------UUGCG- -5' |
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30629 | 5' | -52.7 | NC_006549.1 | + | 128778 | 0.74 | 0.701667 |
Target: 5'- aGCGGCGUAuacgaaccUGCCGucUCCCAuu-CGCu -3' miRNA: 3'- gCGCCGCAU--------GCGGUu-AGGGUuuuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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