miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3063 5' -59.8 NC_001493.1 + 49855 0.66 0.677409
Target:  5'- -cGCGCUCUucgaGGAGGGugGaGGCAcgcacaaaccGCCAa -3'
miRNA:   3'- aaCGCGGGA----CCUCUUugC-CCGU----------CGGU- -5'
3063 5' -59.8 NC_001493.1 + 107222 0.66 0.667195
Target:  5'- -gGCGCCCcGGcGGucGACcugaGGGCGGCCc -3'
miRNA:   3'- aaCGCGGGaCCuCU--UUG----CCCGUCGGu -5'
3063 5' -59.8 NC_001493.1 + 16629 0.66 0.645662
Target:  5'- gUGUGCCCccaUGGGGGAGCcguagggguagauGGGCugucucGCCAu -3'
miRNA:   3'- aACGCGGG---ACCUCUUUG-------------CCCGu-----CGGU- -5'
3063 5' -59.8 NC_001493.1 + 132184 0.66 0.645662
Target:  5'- gUGUGCCCccaUGGGGGAGCcguagggguagauGGGCugucucGCCAu -3'
miRNA:   3'- aACGCGGG---ACCUCUUUG-------------CCCGu-----CGGU- -5'
3063 5' -59.8 NC_001493.1 + 106147 0.67 0.625109
Target:  5'- -gGUGCCCaUGGAGGuGACGGGUGacuuccgacccgcGCCGc -3'
miRNA:   3'- aaCGCGGG-ACCUCU-UUGCCCGU-------------CGGU- -5'
3063 5' -59.8 NC_001493.1 + 26474 0.68 0.56483
Target:  5'- -aGCGUCCaugGGAGAGGgGGGUGGaCCc -3'
miRNA:   3'- aaCGCGGGa--CCUCUUUgCCCGUC-GGu -5'
3063 5' -59.8 NC_001493.1 + 44181 0.69 0.495516
Target:  5'- -cGgGCCCUGGGGGAGcCGauCAGCCGc -3'
miRNA:   3'- aaCgCGGGACCUCUUU-GCccGUCGGU- -5'
3063 5' -59.8 NC_001493.1 + 112695 0.69 0.495516
Target:  5'- --aUGgCCUGGAGGAACGGGCGaucCCGg -3'
miRNA:   3'- aacGCgGGACCUCUUUGCCCGUc--GGU- -5'
3063 5' -59.8 NC_001493.1 + 108839 0.69 0.466986
Target:  5'- gUUGCGUaCCUGGGGuAGACGaGCAGCUc -3'
miRNA:   3'- -AACGCG-GGACCUC-UUUGCcCGUCGGu -5'
3063 5' -59.8 NC_001493.1 + 110498 0.7 0.448445
Target:  5'- -cGCGCCC-GGAGugaaacucGAUGGGCcGCCGc -3'
miRNA:   3'- aaCGCGGGaCCUCu-------UUGCCCGuCGGU- -5'
3063 5' -59.8 NC_001493.1 + 45072 1.05 0.001505
Target:  5'- uUUGCGCCCUGGAGAAACGGGCAGCCAc -3'
miRNA:   3'- -AACGCGGGACCUCUUUGCCCGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.