miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30630 3' -58.5 NC_006549.1 + 41719 0.66 0.771837
Target:  5'- gGGCGCCcGCGGgccccCCGgcccccccggcccccCUGGGCCCg -3'
miRNA:   3'- aUCGUGGuCGUCac---GGCa--------------GACCUGGG- -5'
30630 3' -58.5 NC_006549.1 + 50502 0.66 0.761446
Target:  5'- aGGUggACCAGcCGG-GCCaUCUGGcCCCg -3'
miRNA:   3'- aUCG--UGGUC-GUCaCGGcAGACCuGGG- -5'
30630 3' -58.5 NC_006549.1 + 15117 0.66 0.751879
Target:  5'- aUGGaGCCAGCAGaGCCGUCaaauCCCu -3'
miRNA:   3'- -AUCgUGGUCGUCaCGGCAGaccuGGG- -5'
30630 3' -58.5 NC_006549.1 + 75043 0.66 0.742206
Target:  5'- aAGCGCaggccgcaGGgGGUGCCGUguugggGGACCUa -3'
miRNA:   3'- aUCGUGg-------UCgUCACGGCAga----CCUGGG- -5'
30630 3' -58.5 NC_006549.1 + 7488 0.67 0.732437
Target:  5'- aGGgGCCAagGGUGCCGa-UGGACCUa -3'
miRNA:   3'- aUCgUGGUcgUCACGGCagACCUGGG- -5'
30630 3' -58.5 NC_006549.1 + 80941 0.68 0.621232
Target:  5'- aGGUGgCGGuCAGUGUuugaGUCUGGGCCUg -3'
miRNA:   3'- aUCGUgGUC-GUCACGg---CAGACCUGGG- -5'
30630 3' -58.5 NC_006549.1 + 101887 0.68 0.621232
Target:  5'- gAGCGCCGgauuuGCAgaucGUGUCGcccUUUGGACCCu -3'
miRNA:   3'- aUCGUGGU-----CGU----CACGGC---AGACCUGGG- -5'
30630 3' -58.5 NC_006549.1 + 102456 0.69 0.600798
Target:  5'- gGGCGCCAGCuGgGCCGgg-GGGUCCa -3'
miRNA:   3'- aUCGUGGUCGuCaCGGCagaCCUGGG- -5'
30630 3' -58.5 NC_006549.1 + 102568 0.7 0.501063
Target:  5'- cUGGguCCAGCGcaGCCcUUUGGGCCCg -3'
miRNA:   3'- -AUCguGGUCGUcaCGGcAGACCUGGG- -5'
30630 3' -58.5 NC_006549.1 + 7218 0.71 0.491454
Target:  5'- aGGCcCCGGUAuccccggGCCGUCcGGACCCc -3'
miRNA:   3'- aUCGuGGUCGUca-----CGGCAGaCCUGGG- -5'
30630 3' -58.5 NC_006549.1 + 50173 0.72 0.409286
Target:  5'- gAGCGCCucGCGG-GCCGUCUuuACCCa -3'
miRNA:   3'- aUCGUGGu-CGUCaCGGCAGAccUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.