Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30630 | 5' | -63.9 | NC_006549.1 | + | 6665 | 0.7 | 0.355161 |
Target: 5'- aUGGGaCCCacG-GGACCCGCuggcgauccGGGUCCu -3' miRNA: 3'- aGCCC-GGGaaCgCCUGGGCG---------CCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 6744 | 0.66 | 0.590023 |
Target: 5'- -aGGGCCCga-CGGAgaCaaGGGUCCa -3' miRNA: 3'- agCCCGGGaacGCCUggGcgCCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 6773 | 0.74 | 0.198798 |
Target: 5'- ---aGCCCgguuaagGGACCCGCGGGUCCg -3' miRNA: 3'- agccCGGGaacg---CCUGGGCGCCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 6958 | 0.75 | 0.156712 |
Target: 5'- -aGGGCCCaga-GGGuCCUGCGGGUCCc -3' miRNA: 3'- agCCCGGGaacgCCU-GGGCGCCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 7057 | 0.83 | 0.049646 |
Target: 5'- cCGGGCCCgccggaccccGCGGAcCCCGCGGGcCCg -3' miRNA: 3'- aGCCCGGGaa--------CGCCU-GGGCGCCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 7094 | 0.77 | 0.116946 |
Target: 5'- gUCGGGCUCcaGgGG-UCCGCGGGUCCc -3' miRNA: 3'- -AGCCCGGGaaCgCCuGGGCGCCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 7177 | 0.68 | 0.451907 |
Target: 5'- cCGGGCCCcga-GGACCuCcCGGGcCCa -3' miRNA: 3'- aGCCCGGGaacgCCUGG-GcGCCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 7387 | 0.66 | 0.533106 |
Target: 5'- -aGGGCCCca--GGGCCCGCccggcccuccaGGGcCCc -3' miRNA: 3'- agCCCGGGaacgCCUGGGCG-----------CCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 7846 | 0.66 | 0.561368 |
Target: 5'- aCGGuCCCguagguucgaGgGGACCCGCGGGcgUUCa -3' miRNA: 3'- aGCCcGGGaa--------CgCCUGGGCGCCC--AGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 7962 | 0.67 | 0.514549 |
Target: 5'- -aGGGCCCggucuccGCGGAgcgcccggaCCCGaUGGGgagCCg -3' miRNA: 3'- agCCCGGGaa-----CGCCU---------GGGC-GCCCa--GG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 40514 | 0.7 | 0.326319 |
Target: 5'- cCuGGCCCcguaGGACCCaCGGGUCCc -3' miRNA: 3'- aGcCCGGGaacgCCUGGGcGCCCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 40694 | 0.66 | 0.561368 |
Target: 5'- cCGGGaCCUcGCGGacaaauggGCCCGCaaGGUCUg -3' miRNA: 3'- aGCCCgGGAaCGCC--------UGGGCGc-CCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 40940 | 0.75 | 0.156712 |
Target: 5'- aCGGGCCCcc-CGGGCCCGaUGGGgCCg -3' miRNA: 3'- aGCCCGGGaacGCCUGGGC-GCCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 41075 | 0.66 | 0.533106 |
Target: 5'- gCGGGCgaaaGUGGGCCCGCuGGcCCc -3' miRNA: 3'- aGCCCGggaaCGCCUGGGCGcCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 41131 | 0.66 | 0.546237 |
Target: 5'- -gGGGCCCgagaggaccuauCGGcCCCGCGGGg-- -3' miRNA: 3'- agCCCGGGaac---------GCCuGGGCGCCCagg -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 41254 | 0.66 | 0.561368 |
Target: 5'- gUUGGGCCCaaa-GGACCCaCGGG-Cg -3' miRNA: 3'- -AGCCCGGGaacgCCUGGGcGCCCaGg -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 41406 | 0.68 | 0.426358 |
Target: 5'- gCGGGCCCcguuggGCcaaaaGGGCCCaGCGGGg-- -3' miRNA: 3'- aGCCCGGGaa----CG-----CCUGGG-CGCCCagg -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 41711 | 0.79 | 0.085455 |
Target: 5'- gCGGGCCCcccgGCccccccggccccccuGGGCCCGCGGGcCCa -3' miRNA: 3'- aGCCCGGGaa--CG---------------CCUGGGCGCCCaGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 41765 | 0.67 | 0.514549 |
Target: 5'- aCGGGCCC--GCuGGCgCGCaaGGUCCg -3' miRNA: 3'- aGCCCGGGaaCGcCUGgGCGc-CCAGG- -5' |
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30630 | 5' | -63.9 | NC_006549.1 | + | 41820 | 0.91 | 0.011938 |
Target: 5'- cCGGGCCCgagaGGGCCCGCGGGUCCa -3' miRNA: 3'- aGCCCGGGaacgCCUGGGCGCCCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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