miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30630 5' -63.9 NC_006549.1 + 41847 0.7 0.340519
Target:  5'- gCGGGCCCgcgaGGACCCcCGGGg-- -3'
miRNA:   3'- aGCCCGGGaacgCCUGGGcGCCCagg -5'
30630 5' -63.9 NC_006549.1 + 40514 0.7 0.326319
Target:  5'- cCuGGCCCcguaGGACCCaCGGGUCCc -3'
miRNA:   3'- aGcCCGGGaacgCCUGGGcGCCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 50491 0.71 0.299252
Target:  5'- cCGGGCCauc-UGGcCCCGCGGGgCCa -3'
miRNA:   3'- aGCCCGGgaacGCCuGGGCGCCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 50085 0.71 0.291478
Target:  5'- uUUGGGUCCcUGCucuccgcugucACCCGUGGGUCCu -3'
miRNA:   3'- -AGCCCGGGaACGcc---------UGGGCGCCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 50855 0.73 0.213225
Target:  5'- aCGGaCCCagGUGGGCCCuuGGGUCCu -3'
miRNA:   3'- aGCCcGGGaaCGCCUGGGcgCCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 6773 0.74 0.198798
Target:  5'- ---aGCCCgguuaagGGACCCGCGGGUCCg -3'
miRNA:   3'- agccCGGGaacg---CCUGGGCGCCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 50910 0.74 0.198798
Target:  5'- gUCuGGCCCagGCGuuCCUGUGGGUCCu -3'
miRNA:   3'- -AGcCCGGGaaCGCcuGGGCGCCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 102389 0.75 0.168414
Target:  5'- --uGGCCCUUGUGGACCCaUGGGgCCc -3'
miRNA:   3'- agcCCGGGAACGCCUGGGcGCCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 40940 0.75 0.156712
Target:  5'- aCGGGCCCcc-CGGGCCCGaUGGGgCCg -3'
miRNA:   3'- aGCCCGGGaacGCCUGGGC-GCCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 6958 0.75 0.156712
Target:  5'- -aGGGCCCaga-GGGuCCUGCGGGUCCc -3'
miRNA:   3'- agCCCGGGaacgCCU-GGGCGCCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 49876 0.76 0.152978
Target:  5'- aCGGaCCCUUG-GGGCCCGgGGGcCCa -3'
miRNA:   3'- aGCCcGGGAACgCCUGGGCgCCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 7094 0.77 0.116946
Target:  5'- gUCGGGCUCcaGgGG-UCCGCGGGUCCc -3'
miRNA:   3'- -AGCCCGGGaaCgCCuGGGCGCCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 49679 0.77 0.116946
Target:  5'- cUGGGaCCUUGCGGACCCacgguGCccuuGGGUCCg -3'
miRNA:   3'- aGCCCgGGAACGCCUGGG-----CG----CCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 102577 0.79 0.096848
Target:  5'- cUCGGGCCCcuggGUccagcgcagcccuuuGGGCCCGCGGGgCCg -3'
miRNA:   3'- -AGCCCGGGaa--CG---------------CCUGGGCGCCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 49723 0.79 0.086534
Target:  5'- gCGGGCCCgUGgGGcccguugGCCCGCGaGGUCCc -3'
miRNA:   3'- aGCCCGGGaACgCC-------UGGGCGC-CCAGG- -5'
30630 5' -63.9 NC_006549.1 + 41711 0.79 0.085455
Target:  5'- gCGGGCCCcccgGCccccccggccccccuGGGCCCGCGGGcCCa -3'
miRNA:   3'- aGCCCGGGaa--CG---------------CCUGGGCGCCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 50802 0.82 0.05787
Target:  5'- cUUGGGUCCUgGCGGGCCCGCuGGG-CCu -3'
miRNA:   3'- -AGCCCGGGAaCGCCUGGGCG-CCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 7057 0.83 0.049646
Target:  5'- cCGGGCCCgccggaccccGCGGAcCCCGCGGGcCCg -3'
miRNA:   3'- aGCCCGGGaa--------CGCCU-GGGCGCCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 41820 0.91 0.011938
Target:  5'- cCGGGCCCgagaGGGCCCGCGGGUCCa -3'
miRNA:   3'- aGCCCGGGaacgCCUGGGCGCCCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.