miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30631 3' -60.2 NC_006549.1 + 6666 0.78 0.18404
Target:  5'- --aAUGGGACCCaCGGGACCCgCUGGc -3'
miRNA:   3'- gggUACCCUGGGcGUCCUGGGaGACC- -5'
30631 3' -60.2 NC_006549.1 + 6772 0.72 0.397409
Target:  5'- gCCCGguuaaGGGACCCGCggguccgcaAGGGCCCgacGGa -3'
miRNA:   3'- -GGGUa----CCCUGGGCG---------UCCUGGGagaCC- -5'
30631 3' -60.2 NC_006549.1 + 6955 0.69 0.589305
Target:  5'- gCCCAgaGGGuCCUGCGGGuCCCa-UGGg -3'
miRNA:   3'- -GGGUa-CCCuGGGCGUCCuGGGagACC- -5'
30631 3' -60.2 NC_006549.1 + 7071 0.74 0.321111
Target:  5'- uCCCAccGGACCCGCcGGGCCCgCcGGa -3'
miRNA:   3'- -GGGUacCCUGGGCGuCCUGGGaGaCC- -5'
30631 3' -60.2 NC_006549.1 + 7161 0.66 0.763675
Target:  5'- uCCC---GGGCCCa-AGGGCCCUCcGGg -3'
miRNA:   3'- -GGGuacCCUGGGcgUCCUGGGAGaCC- -5'
30631 3' -60.2 NC_006549.1 + 7356 0.67 0.658296
Target:  5'- cCCCAa-GGACCaaaGGGACCCUCUa- -3'
miRNA:   3'- -GGGUacCCUGGgcgUCCUGGGAGAcc -5'
30631 3' -60.2 NC_006549.1 + 7383 0.71 0.439682
Target:  5'- cCCCA-GGG-CCCGCccGGCCCUCcagGGc -3'
miRNA:   3'- -GGGUaCCCuGGGCGucCUGGGAGa--CC- -5'
30631 3' -60.2 NC_006549.1 + 7727 0.69 0.569755
Target:  5'- cCCCA-GGGGCCCaGgGGGGCCga-UGGg -3'
miRNA:   3'- -GGGUaCCCUGGG-CgUCCUGGgagACC- -5'
30631 3' -60.2 NC_006549.1 + 7842 0.71 0.466243
Target:  5'- uCCCGUagguucgagGGGACCCGCGGG-CgUUCaGGg -3'
miRNA:   3'- -GGGUA---------CCCUGGGCGUCCuGgGAGaCC- -5'
30631 3' -60.2 NC_006549.1 + 7935 0.68 0.608971
Target:  5'- aCCCGauggggagccGGGGCCUG-AGGGCCCccCUGGa -3'
miRNA:   3'- -GGGUa---------CCCUGGGCgUCCUGGGa-GACC- -5'
30631 3' -60.2 NC_006549.1 + 40534 0.71 0.474373
Target:  5'- cCCCAggagauaUGGGAcccccuggcCCCGUAGGACCCacgGGu -3'
miRNA:   3'- -GGGU-------ACCCU---------GGGCGUCCUGGGagaCC- -5'
30631 3' -60.2 NC_006549.1 + 40697 0.7 0.511318
Target:  5'- aCCccGGGACCuCGCGgacaaauGGGCCCgcaaggUCUGGg -3'
miRNA:   3'- gGGuaCCCUGG-GCGU-------CCUGGG------AGACC- -5'
30631 3' -60.2 NC_006549.1 + 41145 0.66 0.726299
Target:  5'- uCCCAcGGGACCUa-GGGGCCCgagaGGa -3'
miRNA:   3'- -GGGUaCCCUGGGcgUCCUGGGaga-CC- -5'
30631 3' -60.2 NC_006549.1 + 41258 0.68 0.618831
Target:  5'- aCCCGUuGGGCCCaaAGGACCCacgGGc -3'
miRNA:   3'- -GGGUAcCCUGGGcgUCCUGGGagaCC- -5'
30631 3' -60.2 NC_006549.1 + 41422 0.7 0.531189
Target:  5'- aCCGacguacGGACCCGCGGGcCCCgUUGGg -3'
miRNA:   3'- gGGUac----CCUGGGCGUCCuGGGaGACC- -5'
30631 3' -60.2 NC_006549.1 + 41688 0.7 0.502897
Target:  5'- cCCCcUGGG-CCCGCGGG-CCCagCaGGa -3'
miRNA:   3'- -GGGuACCCuGGGCGUCCuGGGa-GaCC- -5'
30631 3' -60.2 NC_006549.1 + 41725 0.72 0.405654
Target:  5'- aCCCAgGGGcGCCCGCGGGcCCC-CcGGc -3'
miRNA:   3'- -GGGUaCCC-UGGGCGUCCuGGGaGaCC- -5'
30631 3' -60.2 NC_006549.1 + 41771 0.7 0.502897
Target:  5'- cCCCAgacGGGCCCGCuggcgcgcaAGGuCCgUCUGGc -3'
miRNA:   3'- -GGGUac-CCUGGGCG---------UCCuGGgAGACC- -5'
30631 3' -60.2 NC_006549.1 + 41816 0.69 0.54075
Target:  5'- gCCCGaGaGGGCCCGCGGGuCCaUCcGGa -3'
miRNA:   3'- -GGGUaC-CCUGGGCGUCCuGGgAGaCC- -5'
30631 3' -60.2 NC_006549.1 + 41852 0.68 0.608971
Target:  5'- -gCAUaGcGGGCCCGCgAGGACCCcCgGGg -3'
miRNA:   3'- ggGUA-C-CCUGGGCG-UCCUGGGaGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.