miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30631 3' -60.2 NC_006549.1 + 50805 0.7 0.493611
Target:  5'- cCCCuUGGGuCCUgGCGGG-CCCgCUGGg -3'
miRNA:   3'- -GGGuACCCuGGG-CGUCCuGGGaGACC- -5'
30631 3' -60.2 NC_006549.1 + 40534 0.71 0.474373
Target:  5'- cCCCAggagauaUGGGAcccccuggcCCCGUAGGACCCacgGGu -3'
miRNA:   3'- -GGGU-------ACCCU---------GGGCGUCCUGGGagaCC- -5'
30631 3' -60.2 NC_006549.1 + 7842 0.71 0.466243
Target:  5'- uCCCGUagguucgagGGGACCCGCGGG-CgUUCaGGg -3'
miRNA:   3'- -GGGUA---------CCCUGGGCGUCCuGgGAGaCC- -5'
30631 3' -60.2 NC_006549.1 + 102554 0.71 0.445804
Target:  5'- gCCCuuUGGG-CCCGCGGGGCCggcggaaccagguuCUcCUGGu -3'
miRNA:   3'- -GGGu-ACCCuGGGCGUCCUGG--------------GA-GACC- -5'
30631 3' -60.2 NC_006549.1 + 7383 0.71 0.439682
Target:  5'- cCCCA-GGG-CCCGCccGGCCCUCcagGGc -3'
miRNA:   3'- -GGGUaCCCuGGGCGucCUGGGAGa--CC- -5'
30631 3' -60.2 NC_006549.1 + 41725 0.72 0.405654
Target:  5'- aCCCAgGGGcGCCCGCGGGcCCC-CcGGc -3'
miRNA:   3'- -GGGUaCCC-UGGGCGUCCuGGGaGaCC- -5'
30631 3' -60.2 NC_006549.1 + 6772 0.72 0.397409
Target:  5'- gCCCGguuaaGGGACCCGCggguccgcaAGGGCCCgacGGa -3'
miRNA:   3'- -GGGUa----CCCUGGGCG---------UCCUGGGagaCC- -5'
30631 3' -60.2 NC_006549.1 + 102377 0.72 0.389272
Target:  5'- aCCCAUGGGGCCCGUgucucccauGucACCCUUUGa -3'
miRNA:   3'- -GGGUACCCUGGGCG---------UccUGGGAGACc -5'
30631 3' -60.2 NC_006549.1 + 82542 0.72 0.378859
Target:  5'- aCCCAUGGGGCCCguuggcuauucuacGCAGaGGgccagcgcaauCCCUCUGc -3'
miRNA:   3'- -GGGUACCCUGGG--------------CGUC-CU-----------GGGAGACc -5'
30631 3' -60.2 NC_006549.1 + 49809 0.73 0.365527
Target:  5'- uCCCGUGGG-CCCaGCuGGGCCCacgGGa -3'
miRNA:   3'- -GGGUACCCuGGG-CGuCCUGGGagaCC- -5'
30631 3' -60.2 NC_006549.1 + 50979 0.73 0.350262
Target:  5'- cCCUAaGGGGCCCaUGGGGCCCUUcGGg -3'
miRNA:   3'- -GGGUaCCCUGGGcGUCCUGGGAGaCC- -5'
30631 3' -60.2 NC_006549.1 + 50860 0.73 0.335455
Target:  5'- gCCCAacGGACCCaGguGGGCCCUUgGGu -3'
miRNA:   3'- -GGGUacCCUGGG-CguCCUGGGAGaCC- -5'
30631 3' -60.2 NC_006549.1 + 7071 0.74 0.321111
Target:  5'- uCCCAccGGACCCGCcGGGCCCgCcGGa -3'
miRNA:   3'- -GGGUacCCUGGGCGuCCUGGGaGaCC- -5'
30631 3' -60.2 NC_006549.1 + 101919 0.74 0.314113
Target:  5'- aCCcgGGGGCCCuGCAGG-CCCUg-GGa -3'
miRNA:   3'- gGGuaCCCUGGG-CGUCCuGGGAgaCC- -5'
30631 3' -60.2 NC_006549.1 + 49872 0.74 0.293815
Target:  5'- aCCCuUGGGGCCCG-GGGGCCCaggGGg -3'
miRNA:   3'- -GGGuACCCUGGGCgUCCUGGGagaCC- -5'
30631 3' -60.2 NC_006549.1 + 50442 0.76 0.239085
Target:  5'- cCCCGccGGACCgGCGGGGCCCaUUGGu -3'
miRNA:   3'- -GGGUacCCUGGgCGUCCUGGGaGACC- -5'
30631 3' -60.2 NC_006549.1 + 50380 0.77 0.217626
Target:  5'- uUCCAUcuGGCCCgGgAGGACCCUCUGGg -3'
miRNA:   3'- -GGGUAccCUGGG-CgUCCUGGGAGACC- -5'
30631 3' -60.2 NC_006549.1 + 49719 0.77 0.202632
Target:  5'- gCCCGUGGGGCCCGUuggcccgcgAGGucccgcuugACCC-CUGGg -3'
miRNA:   3'- -GGGUACCCUGGGCG---------UCC---------UGGGaGACC- -5'
30631 3' -60.2 NC_006549.1 + 6666 0.78 0.18404
Target:  5'- --aAUGGGACCCaCGGGACCCgCUGGc -3'
miRNA:   3'- gggUACCCUGGGcGUCCUGGGaGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.