Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30632 | 5' | -65.5 | NC_006549.1 | + | 99968 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100031 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100094 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100157 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100282 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 50904 | 0.66 | 0.432972 |
Target: 5'- --cCCAGGcguuccuguGGGUCCUCugGGGCCuuGGg -3' miRNA: 3'- aaaGGUCCc--------CCCGGGAG--UCCGGggCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 50506 | 0.66 | 0.432972 |
Target: 5'- -gUCCAGGuGGaccagccgGGCCaUCuGGCCCCGcGg -3' miRNA: 3'- aaAGGUCC-CC--------CCGGgAGuCCGGGGC-C- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 7691 | 0.66 | 0.467772 |
Target: 5'- --aUCAGGGGGGCUUUUGGaCCCgaCGGa -3' miRNA: 3'- aaaGGUCCCCCCGGGAGUCcGGG--GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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