Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30632 | 5' | -65.5 | NC_006549.1 | + | 49854 | 0.8 | 0.049792 |
Target: 5'- --cCCAGGGGGGCCCggAGGCCCUu- -3' miRNA: 3'- aaaGGUCCCCCCGGGagUCCGGGGcc -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 101919 | 0.8 | 0.053793 |
Target: 5'- --aCCc-GGGGGCCCUgCAGGCCCUGGg -3' miRNA: 3'- aaaGGucCCCCCGGGA-GUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 50850 | 0.78 | 0.071303 |
Target: 5'- --cCCAGGuGGGCCCUUGGGUCCUGGc -3' miRNA: 3'- aaaGGUCCcCCCGGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 102130 | 0.75 | 0.118005 |
Target: 5'- -gUCCuGGGGGGCCaggAGGUCCUGGg -3' miRNA: 3'- aaAGGuCCCCCCGGgagUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 41724 | 0.75 | 0.124003 |
Target: 5'- --cCCAGGGGcGCCCgCGGGCCCCc- -3' miRNA: 3'- aaaGGUCCCCcCGGGaGUCCGGGGcc -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 7718 | 0.74 | 0.147285 |
Target: 5'- --cCCAGGGGGGCCgaUGGGCCgCaGGg -3' miRNA: 3'- aaaGGUCCCCCCGGgaGUCCGGgG-CC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 41830 | 0.73 | 0.158435 |
Target: 5'- --cCCGGGGgcgccGGGCCCgagaGGGCCCgCGGg -3' miRNA: 3'- aaaGGUCCC-----CCCGGGag--UCCGGG-GCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 49629 | 0.72 | 0.174486 |
Target: 5'- cUUUCCAGGa-GGUCCUCuAGGCCCgGGu -3' miRNA: 3'- -AAAGGUCCccCCGGGAG-UCCGGGgCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 7382 | 0.71 | 0.206073 |
Target: 5'- --cCCAGGGcccgcccGGCCCUCcaGGGCCCCa- -3' miRNA: 3'- aaaGGUCCCc------CCGGGAG--UCCGGGGcc -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 102600 | 0.71 | 0.226264 |
Target: 5'- -cUCCGGGGugcccGGGaggacCUCUCGGGCCCCuGGg -3' miRNA: 3'- aaAGGUCCC-----CCC-----GGGAGUCCGGGG-CC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 7117 | 0.69 | 0.310324 |
Target: 5'- gUUCCGccGGGcccauGGGCCCagUCGGGCUCCaGGg -3' miRNA: 3'- aAAGGU--CCC-----CCCGGG--AGUCCGGGG-CC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 40989 | 0.68 | 0.331171 |
Target: 5'- -aUCCcuGGGGGCCC-CcGGUCCCa- -3' miRNA: 3'- aaAGGucCCCCCGGGaGuCCGGGGcc -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 50253 | 0.68 | 0.359028 |
Target: 5'- uUUUCCAGGcGGGCCagcgucucccaCGGGCCCUuGGa -3' miRNA: 3'- -AAAGGUCCcCCCGGga---------GUCCGGGG-CC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100219 | 0.67 | 0.375889 |
Target: 5'- -cUCUGGcuGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc-CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 7537 | 0.67 | 0.383727 |
Target: 5'- aUUCUAGcccGGuGGGCCCUCagGGGCCagaGGg -3' miRNA: 3'- aAAGGUC---CC-CCCGGGAG--UCCGGgg-CC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 99842 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100282 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100157 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 99779 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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30632 | 5' | -65.5 | NC_006549.1 | + | 100031 | 0.67 | 0.407885 |
Target: 5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3' miRNA: 3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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