miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3064 5' -55.5 NC_001493.1 + 34262 0.66 0.900566
Target:  5'- aUCGAGCACGUgggUggGUCCGCcagcUgCCg -3'
miRNA:   3'- -AGUUCGUGCAa--GuuCGGGCGc---AgGGa -5'
3064 5' -55.5 NC_001493.1 + 46220 0.66 0.893965
Target:  5'- ---cGCGCGUUCAAugcGCCgGUG-CCCg -3'
miRNA:   3'- aguuCGUGCAAGUU---CGGgCGCaGGGa -5'
3064 5' -55.5 NC_001493.1 + 29121 0.66 0.880061
Target:  5'- cUCGAGCGCGUccuuuuuggUCcGGgCCGUGcCCCc -3'
miRNA:   3'- -AGUUCGUGCA---------AGuUCgGGCGCaGGGa -5'
3064 5' -55.5 NC_001493.1 + 72336 0.67 0.872765
Target:  5'- aUCAugGGCcUGcUCGGGCCCGUGUCUg- -3'
miRNA:   3'- -AGU--UCGuGCaAGUUCGGGCGCAGGga -5'
3064 5' -55.5 NC_001493.1 + 102728 0.67 0.872765
Target:  5'- gUggGUugGUgacggUCAAGCCC-CaGUCCCUc -3'
miRNA:   3'- aGuuCGugCA-----AGUUCGGGcG-CAGGGA- -5'
3064 5' -55.5 NC_001493.1 + 61335 0.67 0.857514
Target:  5'- -gAGGCAgGUU--GGCCCGgaGUCCCg -3'
miRNA:   3'- agUUCGUgCAAguUCGGGCg-CAGGGa -5'
3064 5' -55.5 NC_001493.1 + 91684 0.67 0.84957
Target:  5'- ---uGUugGUUUggGCgCCGgGUCCCc -3'
miRNA:   3'- aguuCGugCAAGuuCG-GGCgCAGGGa -5'
3064 5' -55.5 NC_001493.1 + 13481 0.67 0.841423
Target:  5'- cCGAGCACcg-CAcGCCCGCaGUUCCc -3'
miRNA:   3'- aGUUCGUGcaaGUuCGGGCG-CAGGGa -5'
3064 5' -55.5 NC_001493.1 + 129036 0.67 0.841423
Target:  5'- cCGAGCACcg-CAcGGCCCGCaGUUCCc -3'
miRNA:   3'- aGUUCGUGcaaGU-UCGGGCG-CAGGGa -5'
3064 5' -55.5 NC_001493.1 + 45588 0.67 0.841423
Target:  5'- gUCccuCAUGUUCAAGCCCG-GUCCg- -3'
miRNA:   3'- -AGuucGUGCAAGUUCGGGCgCAGGga -5'
3064 5' -55.5 NC_001493.1 + 4883 0.68 0.824549
Target:  5'- cUCAAGa--GUUUcaGAGCUCGCGUCUCg -3'
miRNA:   3'- -AGUUCgugCAAG--UUCGGGCGCAGGGa -5'
3064 5' -55.5 NC_001493.1 + 120437 0.68 0.824549
Target:  5'- cUCAAGa--GUUUcaGAGCUCGCGUCUCg -3'
miRNA:   3'- -AGUUCgugCAAG--UUCGGGCGCAGGGa -5'
3064 5' -55.5 NC_001493.1 + 112661 0.69 0.769878
Target:  5'- -gAAGUucGCG-UCGAGCCUGCG-CCCg -3'
miRNA:   3'- agUUCG--UGCaAGUUCGGGCGCaGGGa -5'
3064 5' -55.5 NC_001493.1 + 102058 0.75 0.421204
Target:  5'- gCGAGCGCGcUCAucAGCCaCGCGaCCCUg -3'
miRNA:   3'- aGUUCGUGCaAGU--UCGG-GCGCaGGGA- -5'
3064 5' -55.5 NC_001493.1 + 86992 0.78 0.287045
Target:  5'- gUCGAGCGCaggGUUUcAGCCCGUGUCCUg -3'
miRNA:   3'- -AGUUCGUG---CAAGuUCGGGCGCAGGGa -5'
3064 5' -55.5 NC_001493.1 + 45554 1.09 0.002859
Target:  5'- cUCAAGCACGUUCAAGCCCGCGUCCCUa -3'
miRNA:   3'- -AGUUCGUGCAAGUUCGGGCGCAGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.