miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30641 5' -49.2 NC_006549.1 + 44383 0.66 0.998008
Target:  5'- cGCAAACuACGuGUGCgagaaaUGCGGCa -3'
miRNA:   3'- -CGUUUG-UGCuCGCGaggaaaACGUCG- -5'
30641 5' -49.2 NC_006549.1 + 101907 0.66 0.998008
Target:  5'- uGCAGGCccugggacaccGCGAGCGCcggaUUUGCAGa -3'
miRNA:   3'- -CGUUUG-----------UGCUCGCGaggaAAACGUCg -5'
30641 5' -49.2 NC_006549.1 + 59251 0.66 0.998008
Target:  5'- gGCGAa---GAGgGCUCCUgg-GUGGCg -3'
miRNA:   3'- -CGUUugugCUCgCGAGGAaaaCGUCG- -5'
30641 5' -49.2 NC_006549.1 + 59224 0.66 0.998008
Target:  5'- gGCGAa---GAGgGCUCCUgg-GUGGCg -3'
miRNA:   3'- -CGUUugugCUCgCGAGGAaaaCGUCG- -5'
30641 5' -49.2 NC_006549.1 + 59197 0.66 0.998008
Target:  5'- gGCGAa---GAGgGCUCCUgg-GUGGCg -3'
miRNA:   3'- -CGUUugugCUCgCGAGGAaaaCGUCG- -5'
30641 5' -49.2 NC_006549.1 + 59170 0.66 0.998008
Target:  5'- gGCGAa---GAGgGCUCCUgg-GUGGCg -3'
miRNA:   3'- -CGUUugugCUCgCGAGGAaaaCGUCG- -5'
30641 5' -49.2 NC_006549.1 + 59143 0.66 0.998008
Target:  5'- gGCGAa---GAGgGCUCCUgg-GUGGCg -3'
miRNA:   3'- -CGUUugugCUCgCGAGGAaaaCGUCG- -5'
30641 5' -49.2 NC_006549.1 + 59116 0.66 0.998008
Target:  5'- gGCGAa---GAGgGCUCCUgg-GUGGCg -3'
miRNA:   3'- -CGUUugugCUCgCGAGGAaaaCGUCG- -5'
30641 5' -49.2 NC_006549.1 + 59089 0.66 0.998008
Target:  5'- gGCGAa---GAGgGCUCCUgg-GUGGCg -3'
miRNA:   3'- -CGUUugugCUCgCGAGGAaaaCGUCG- -5'
30641 5' -49.2 NC_006549.1 + 59062 0.66 0.998008
Target:  5'- gGCGAa---GAGgGCUCCUgg-GUGGCg -3'
miRNA:   3'- -CGUUugugCUCgCGAGGAaaaCGUCG- -5'
30641 5' -49.2 NC_006549.1 + 59035 0.66 0.998008
Target:  5'- gGCGAa---GAGgGCUCCUgg-GUGGCg -3'
miRNA:   3'- -CGUUugugCUCgCGAGGAaaaCGUCG- -5'
30641 5' -49.2 NC_006549.1 + 26703 0.66 0.997971
Target:  5'- cGCAAgucucucgucAUAuCGAGCGUUCCggUUGCuauagacgcggagGGCg -3'
miRNA:   3'- -CGUU----------UGU-GCUCGCGAGGaaAACG-------------UCG- -5'
30641 5' -49.2 NC_006549.1 + 51760 0.66 0.997156
Target:  5'- cCAGACGCugcaaaagGAGCGCUCgugUUUGC-GCc -3'
miRNA:   3'- cGUUUGUG--------CUCGCGAGga-AAACGuCG- -5'
30641 5' -49.2 NC_006549.1 + 137131 0.67 0.995329
Target:  5'- ----cCGCGGGCGaUUCCgaugcggGCAGCg -3'
miRNA:   3'- cguuuGUGCUCGC-GAGGaaaa---CGUCG- -5'
30641 5' -49.2 NC_006549.1 + 32902 0.67 0.993649
Target:  5'- uGCu--CGCGAGCGUUgCggucgcUGCAGUg -3'
miRNA:   3'- -CGuuuGUGCUCGCGAgGaaa---ACGUCG- -5'
30641 5' -49.2 NC_006549.1 + 73263 0.67 0.993649
Target:  5'- -aGAACACGGGCGCaucagacacgCCUUUUcggacGCAaGCu -3'
miRNA:   3'- cgUUUGUGCUCGCGa---------GGAAAA-----CGU-CG- -5'
30641 5' -49.2 NC_006549.1 + 107482 0.67 0.992957
Target:  5'- cGCAAaacugacguggacucACAUGGGCGCgcgugugUCCgacUUUGCgAGCg -3'
miRNA:   3'- -CGUU---------------UGUGCUCGCG-------AGGa--AAACG-UCG- -5'
30641 5' -49.2 NC_006549.1 + 15611 0.68 0.988849
Target:  5'- uGCAccuGACGCuaGGCGCUCCUcucUGC-GCg -3'
miRNA:   3'- -CGU---UUGUGc-UCGCGAGGAaa-ACGuCG- -5'
30641 5' -49.2 NC_006549.1 + 127939 0.69 0.981612
Target:  5'- aGCGAucguuGCACGuG-GCUCCa--UGCGGCa -3'
miRNA:   3'- -CGUU-----UGUGCuCgCGAGGaaaACGUCG- -5'
30641 5' -49.2 NC_006549.1 + 44478 0.7 0.964851
Target:  5'- ---uGCGCGucGCGCUCCccauccgGCAGCu -3'
miRNA:   3'- cguuUGUGCu-CGCGAGGaaaa---CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.