Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30642 | 5' | -52.7 | NC_006549.1 | + | 27572 | 0.66 | 0.972519 |
Target: 5'- -cUGGACGCGCG-UGUUCGuuACAAa-- -3' miRNA: 3'- caACCUGCGCGCcGCAGGU--UGUUaag -5' |
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30642 | 5' | -52.7 | NC_006549.1 | + | 15833 | 0.66 | 0.96641 |
Target: 5'- --aGGugaGCGCGGCGUCUuguuGCGGg-- -3' miRNA: 3'- caaCCug-CGCGCCGCAGGu---UGUUaag -5' |
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30642 | 5' | -52.7 | NC_006549.1 | + | 98907 | 0.67 | 0.955545 |
Target: 5'- cUUGGACGCGCaGGauccaUCCAGCGu--- -3' miRNA: 3'- cAACCUGCGCG-CCgc---AGGUUGUuaag -5' |
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30642 | 5' | -52.7 | NC_006549.1 | + | 120105 | 0.67 | 0.942511 |
Target: 5'- -aUGGGCaaGCGGCgGUCUAAacgGAUUCg -3' miRNA: 3'- caACCUGcgCGCCG-CAGGUUg--UUAAG- -5' |
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30642 | 5' | -52.7 | NC_006549.1 | + | 106510 | 0.71 | 0.790329 |
Target: 5'- uGUUGGugGUGUuucGGCccGUCCGcCAAUUCa -3' miRNA: 3'- -CAACCugCGCG---CCG--CAGGUuGUUAAG- -5' |
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30642 | 5' | -52.7 | NC_006549.1 | + | 107460 | 0.79 | 0.381828 |
Target: 5'- -aUGGGCGCGCGuGUGUCCGACu---- -3' miRNA: 3'- caACCUGCGCGC-CGCAGGUUGuuaag -5' |
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30642 | 5' | -52.7 | NC_006549.1 | + | 54031 | 0.79 | 0.373349 |
Target: 5'- uGUUGGACGC-CGcGCGUCCAACAc--- -3' miRNA: 3'- -CAACCUGCGcGC-CGCAGGUUGUuaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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