Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30646 | 3' | -60.6 | NC_006549.1 | + | 14316 | 0.68 | 0.568146 |
Target: 5'- aGGAUACCCgUaGGGGUgGAGGcGGGUAu -3' miRNA: 3'- -UUUAUGGGgGgCCCCAgCUCU-CCCGU- -5' |
|||||||
30646 | 3' | -60.6 | NC_006549.1 | + | 5150 | 0.68 | 0.548414 |
Target: 5'- ---cGCaCCUCCGGGcGU-GGGAGGGCu -3' miRNA: 3'- uuuaUG-GGGGGCCC-CAgCUCUCCCGu -5' |
|||||||
30646 | 3' | -60.6 | NC_006549.1 | + | 129384 | 0.69 | 0.472085 |
Target: 5'- --uUGCCUCUCGGGGcUUGAGAGG-CGa -3' miRNA: 3'- uuuAUGGGGGGCCCC-AGCUCUCCcGU- -5' |
|||||||
30646 | 3' | -60.6 | NC_006549.1 | + | 40937 | 0.72 | 0.345525 |
Target: 5'- ---gGCCCCCCGGGccCGAuGGGGCc -3' miRNA: 3'- uuuaUGGGGGGCCCcaGCUcUCCCGu -5' |
|||||||
30646 | 3' | -60.6 | NC_006549.1 | + | 41834 | 0.74 | 0.239461 |
Target: 5'- ---gACCCCCgGGGGcgccgggccCGAGAGGGCc -3' miRNA: 3'- uuuaUGGGGGgCCCCa--------GCUCUCCCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home