miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3065 3' -53.7 NC_001493.1 + 34425 0.66 0.944106
Target:  5'- uCGGacUGGACGAUGUGAauacugccguUgugggucgcgaggacGGCCGUCUAUa -3'
miRNA:   3'- -GUC--ACCUGCUACACU----------A---------------CCGGUAGGUG- -5'
3065 3' -53.7 NC_001493.1 + 63620 0.66 0.93228
Target:  5'- ---cGGGCaucgccGGUGUGGUGGUCA-CCGCg -3'
miRNA:   3'- gucaCCUG------CUACACUACCGGUaGGUG- -5'
3065 3' -53.7 NC_001493.1 + 60456 0.67 0.926923
Target:  5'- aAGUGGACGGUGUcGUGcacgggggguGUCAUCCuCa -3'
miRNA:   3'- gUCACCUGCUACAcUAC----------CGGUAGGuG- -5'
3065 3' -53.7 NC_001493.1 + 126307 0.67 0.915444
Target:  5'- gAGUGGAUGGccgUGUcGUGGgCAUCgGCg -3'
miRNA:   3'- gUCACCUGCU---ACAcUACCgGUAGgUG- -5'
3065 3' -53.7 NC_001493.1 + 10753 0.67 0.915444
Target:  5'- gAGUGGAUGGccgUGUcGUGGgCAUCgGCg -3'
miRNA:   3'- gUCACCUGCU---ACAcUACCgGUAGgUG- -5'
3065 3' -53.7 NC_001493.1 + 63113 0.67 0.909326
Target:  5'- ---cGGGCaucgccGGUGUGGUGGUCA-CCACg -3'
miRNA:   3'- gucaCCUG------CUACACUACCGGUaGGUG- -5'
3065 3' -53.7 NC_001493.1 + 63374 0.67 0.909326
Target:  5'- ---cGGGCaucgccGGUGUGGUGGUCA-CCACg -3'
miRNA:   3'- gucaCCUG------CUACACUACCGGUaGGUG- -5'
3065 3' -53.7 NC_001493.1 + 63158 0.67 0.909326
Target:  5'- ---cGGGCuucgccGGUGUGGUGGUCA-CCACg -3'
miRNA:   3'- gucaCCUG------CUACACUACCGGUaGGUG- -5'
3065 3' -53.7 NC_001493.1 + 63677 0.67 0.909326
Target:  5'- ---cGGGCaucgccGGUGUGGUGGUCA-CCACg -3'
miRNA:   3'- gucaCCUG------CUACACUACCGGUaGGUG- -5'
3065 3' -53.7 NC_001493.1 + 41907 0.67 0.902956
Target:  5'- aGGUGGccaACGAcG-GAUGGCCAUggUCACg -3'
miRNA:   3'- gUCACC---UGCUaCaCUACCGGUA--GGUG- -5'
3065 3' -53.7 NC_001493.1 + 63783 0.68 0.889476
Target:  5'- -cGUcGcCGAUGUGGUGGUCA-CCGCg -3'
miRNA:   3'- guCAcCuGCUACACUACCGGUaGGUG- -5'
3065 3' -53.7 NC_001493.1 + 88254 0.68 0.889476
Target:  5'- --cUGGACGAUGUGuacgaucugGUGGCCAagacgaCACa -3'
miRNA:   3'- gucACCUGCUACAC---------UACCGGUag----GUG- -5'
3065 3' -53.7 NC_001493.1 + 42092 0.68 0.875033
Target:  5'- -cGUGGAcucgcccggcuCGGUcGUGAccaUGGCCAUCCGu -3'
miRNA:   3'- guCACCU-----------GCUA-CACU---ACCGGUAGGUg -5'
3065 3' -53.7 NC_001493.1 + 63734 0.68 0.875033
Target:  5'- ---cGGGCGucgccgGUGUGGUGGUCA-CCGCg -3'
miRNA:   3'- gucaCCUGC------UACACUACCGGUaGGUG- -5'
3065 3' -53.7 NC_001493.1 + 78400 0.69 0.843427
Target:  5'- -cGUGGAgGAUGUGcaacAUGGCCGUUg-- -3'
miRNA:   3'- guCACCUgCUACAC----UACCGGUAGgug -5'
3065 3' -53.7 NC_001493.1 + 38128 0.7 0.799401
Target:  5'- -cGUGGAC--UGUG-UGGUCAUCUACa -3'
miRNA:   3'- guCACCUGcuACACuACCGGUAGGUG- -5'
3065 3' -53.7 NC_001493.1 + 69668 0.71 0.721128
Target:  5'- gGGUGGGCGcgGUGGUGGaaaagGUCCGg -3'
miRNA:   3'- gUCACCUGCuaCACUACCgg---UAGGUg -5'
3065 3' -53.7 NC_001493.1 + 88213 0.72 0.690157
Target:  5'- cCGGUGGAcCGGUGUGAgugaagcGGCCA-CCGa -3'
miRNA:   3'- -GUCACCU-GCUACACUa------CCGGUaGGUg -5'
3065 3' -53.7 NC_001493.1 + 95887 0.72 0.679718
Target:  5'- ---cGGACGAUGUcuacguaccGGUGGCCggcgGUCCGCu -3'
miRNA:   3'- gucaCCUGCUACA---------CUACCGG----UAGGUG- -5'
3065 3' -53.7 NC_001493.1 + 63495 0.74 0.553778
Target:  5'- -cGUGGGCaucgccGGUGUGGUGGUCA-CCACg -3'
miRNA:   3'- guCACCUG------CUACACUACCGGUaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.