miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3065 5' -55.5 NC_001493.1 + 75717 0.66 0.928011
Target:  5'- --cCGAGACCAUCCCGaggagagggggguucGUgAUggcaCCGCu -3'
miRNA:   3'- guuGCUCUGGUAGGGC---------------CAgUAg---GGCG- -5'
3065 5' -55.5 NC_001493.1 + 90571 0.66 0.928011
Target:  5'- gAGCGAGACCGUCacgacggCGcuagaggaugacaccGUCGUCUCGUc -3'
miRNA:   3'- gUUGCUCUGGUAGg------GC---------------CAGUAGGGCG- -5'
3065 5' -55.5 NC_001493.1 + 39349 0.66 0.925883
Target:  5'- -cACGAGcuCCGUCCgcgcucuaccggCGGUCGUuCCCGg -3'
miRNA:   3'- guUGCUCu-GGUAGG------------GCCAGUA-GGGCg -5'
3065 5' -55.5 NC_001493.1 + 85624 0.66 0.925883
Target:  5'- uGACGAcGAUCAUCaCCGaGUUuuAUgCCGCg -3'
miRNA:   3'- gUUGCU-CUGGUAG-GGC-CAG--UAgGGCG- -5'
3065 5' -55.5 NC_001493.1 + 53343 0.66 0.925883
Target:  5'- --uCGAGACUcgaGUCUCGuGg-GUCCCGCa -3'
miRNA:   3'- guuGCUCUGG---UAGGGC-CagUAGGGCG- -5'
3065 5' -55.5 NC_001493.1 + 128442 0.66 0.920394
Target:  5'- gGugGAGAgcgcCCgAUCCCGGUgAggcuccCCCGUg -3'
miRNA:   3'- gUugCUCU----GG-UAGGGCCAgUa-----GGGCG- -5'
3065 5' -55.5 NC_001493.1 + 12888 0.66 0.920394
Target:  5'- gGugGAGAgcgcCCgAUCCCGGUgAggcuccCCCGUg -3'
miRNA:   3'- gUugCUCU----GG-UAGGGCCAgUa-----GGGCG- -5'
3065 5' -55.5 NC_001493.1 + 96537 0.66 0.920394
Target:  5'- uCGACGGGuaguACCAUCaccgaCGGUgagcCAUgCCGCa -3'
miRNA:   3'- -GUUGCUC----UGGUAGg----GCCA----GUAgGGCG- -5'
3065 5' -55.5 NC_001493.1 + 16119 0.66 0.916985
Target:  5'- --uCGAGACUccucgaguuccugagGUaCCUGGUCAUUCCGg -3'
miRNA:   3'- guuGCUCUGG---------------UA-GGGCCAGUAGGGCg -5'
3065 5' -55.5 NC_001493.1 + 131674 0.66 0.916985
Target:  5'- --uCGAGACUccucgaguuccugagGUaCCUGGUCAUUCCGg -3'
miRNA:   3'- guuGCUCUGG---------------UA-GGGCCAGUAGGGCg -5'
3065 5' -55.5 NC_001493.1 + 27778 0.66 0.914665
Target:  5'- --uCGGGGCCgAUCCCGag---CCCGCg -3'
miRNA:   3'- guuGCUCUGG-UAGGGCcaguaGGGCG- -5'
3065 5' -55.5 NC_001493.1 + 131743 0.66 0.9087
Target:  5'- uCAcCGAGACCuUCCUGucCAUCCuCGCc -3'
miRNA:   3'- -GUuGCUCUGGuAGGGCcaGUAGG-GCG- -5'
3065 5' -55.5 NC_001493.1 + 26238 0.66 0.9087
Target:  5'- --cCGGGcCCGUCUgGGUCGaCCCGa -3'
miRNA:   3'- guuGCUCuGGUAGGgCCAGUaGGGCg -5'
3065 5' -55.5 NC_001493.1 + 16189 0.66 0.9087
Target:  5'- uCAcCGAGACCuUCCUGucCAUCCuCGCc -3'
miRNA:   3'- -GUuGCUCUGGuAGGGCcaGUAGG-GCG- -5'
3065 5' -55.5 NC_001493.1 + 2820 0.66 0.902498
Target:  5'- gGACGAGggcgugcucagcGCCAUcaaCCUGGUCuucUCCgGCg -3'
miRNA:   3'- gUUGCUC------------UGGUA---GGGCCAGu--AGGgCG- -5'
3065 5' -55.5 NC_001493.1 + 94666 0.66 0.902498
Target:  5'- -cACGuGGACCAguuaCCgGGUCGUgCCCGa -3'
miRNA:   3'- guUGC-UCUGGUa---GGgCCAGUA-GGGCg -5'
3065 5' -55.5 NC_001493.1 + 118374 0.66 0.902498
Target:  5'- gGACGAGggcgugcucagcGCCAUcaaCCUGGUCuucUCCgGCg -3'
miRNA:   3'- gUUGCUC------------UGGUA---GGGCCAGu--AGGgCG- -5'
3065 5' -55.5 NC_001493.1 + 91795 0.67 0.898664
Target:  5'- aCGGgGAGACCgAUCCCcguucccagacggagGGUgCG-CCCGCg -3'
miRNA:   3'- -GUUgCUCUGG-UAGGG---------------CCA-GUaGGGCG- -5'
3065 5' -55.5 NC_001493.1 + 70701 0.67 0.894747
Target:  5'- gCGACGAGAUCAagcugugcaaggCCCGGgcggggAUCCCGg -3'
miRNA:   3'- -GUUGCUCUGGUa-----------GGGCCag----UAGGGCg -5'
3065 5' -55.5 NC_001493.1 + 133123 0.67 0.888717
Target:  5'- gAGCGcuaucAGGCCGaucuggaacacgaUCCCGGgCAcgCCCGCg -3'
miRNA:   3'- gUUGC-----UCUGGU-------------AGGGCCaGUa-GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.