miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
30650	3'	-55.3	NC_006549.1	+	5898	0.66	0.936353
	Target:  5'- gUCGGAGCuGUCUUgaaaCGUGCUGGCCugcgcGCCAa -3' miRNA:   3'- -GGCUUUG-CAGGA----GCAUGGUCGG-----CGGU- -5'
30650	3'	-55.3	NC_006549.1	+	97651	0.66	0.920682
	Target:  5'- gUGGGACG-CCUCG-ACCGGcCCGgCGg -3' miRNA:   3'- gGCUUUGCaGGAGCaUGGUC-GGCgGU- -5'
30650	3'	-55.3	NC_006549.1	+	130109	0.67	0.889842
	Target:  5'- gCCGGAGCcccugaacUCUUCGggcugguUCGGCCGCCAg -3' miRNA:   3'- -GGCUUUGc-------AGGAGCau-----GGUCGGCGGU- -5'
30650	3'	-55.3	NC_006549.1	+	117651	0.67	0.880883
	Target:  5'- -gGAGGCGgcuuccaccagcucUCCUCGUGCU-GCgGCCAg -3' miRNA:   3'- ggCUUUGC--------------AGGAGCAUGGuCGgCGGU- -5'
30650	3'	-55.3	NC_006549.1	+	50514	0.68	0.868608
	Target:  5'- uCCGguGgGUCCagGUggACCAGCCggGCCAu -3' miRNA:   3'- -GGCuuUgCAGGagCA--UGGUCGG--CGGU- -5'
30650	3'	-55.3	NC_006549.1	+	77993	0.69	0.811963
	Target:  5'- -aGggGCaGUCC-CGUGCC-GCuCGCCAa -3' miRNA:   3'- ggCuuUG-CAGGaGCAUGGuCG-GCGGU- -5'
30650	3'	-55.3	NC_006549.1	+	50177	0.7	0.775859
	Target:  5'- cCCGGAGCG-CCUC--GCgGGCCGUCu -3' miRNA:   3'- -GGCUUUGCaGGAGcaUGgUCGGCGGu -5'
30650	3'	-55.3	NC_006549.1	+	136717	0.71	0.731846
	Target:  5'- gCUGGagGACGUCCUCGaagggucccucgcggUACCAaaagacGCCGCCu -3' miRNA:   3'- -GGCU--UUGCAGGAGC---------------AUGGU------CGGCGGu -5'
30650	3'	-55.3	NC_006549.1	+	55276	0.71	0.708103
	Target:  5'- aCCGAAuuuaGgGUCgUUUGUAgCGGCCGCCAc -3' miRNA:   3'- -GGCUU----UgCAG-GAGCAUgGUCGGCGGU- -5'
30650	3'	-55.3	NC_006549.1	+	7775	0.74	0.516459
	Target:  5'- uCCGGcagcGCGUCCUCGg---GGCCGCCAg -3' miRNA:   3'- -GGCUu---UGCAGGAGCauggUCGGCGGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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