Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30650 | 5' | -55.6 | NC_006549.1 | + | 97878 | 0.66 | 0.908975 |
|
Target: 5'- gACGGCGACGa-AGGuaaccuguauuuGCCgcaagguccccaGGCCAUCg -3' miRNA: 3'- gUGCCGCUGCaaUCCu-----------UGG------------CCGGUAG- -5' |
|||||||
| 30650 | 5' | -55.6 | NC_006549.1 | + | 52761 | 0.67 | 0.886863 |
|
Target: 5'- aCGCGGCaACGUUccccgucgcaggAGGAACaagcggcggagcgcgCGGCCAUg -3' miRNA: 3'- -GUGCCGcUGCAA------------UCCUUG---------------GCCGGUAg -5' |
|||||||
| 30650 | 5' | -55.6 | NC_006549.1 | + | 128781 | 0.67 | 0.884085 |
|
Target: 5'- gACaGCGGCGUaUAcGAACCuGCCGUCu -3' miRNA: 3'- gUGcCGCUGCA-AUcCUUGGcCGGUAG- -5' |
|||||||
| 30650 | 5' | -55.6 | NC_006549.1 | + | 38595 | 0.67 | 0.849632 |
|
Target: 5'- uGCGGCGACGUcgUAauuuaacgccccuauGGAACCGuCCAa- -3' miRNA: 3'- gUGCCGCUGCA--AU---------------CCUUGGCcGGUag -5' |
|||||||
| 30650 | 5' | -55.6 | NC_006549.1 | + | 48563 | 0.71 | 0.66748 |
|
Target: 5'- aGCGGCGACaGUcAGGAACC-GUUGUCg -3' miRNA: 3'- gUGCCGCUG-CAaUCCUUGGcCGGUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home