miRNA: 3'- -GGa-----GUuCUCUaUAC-GCGUGCACUGUG- -5'
miRNA: 3'- -GGAGU--UCUCUAUAcGCgUGCaCUGUG- -5'
miRNA: 3'- -GGAGUUCUCuauACGcGUGCaCUGUG- -5'
miRNA: 3'- -GGAGUUCU-CUAUa--CGCGUGCac-----UGUG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30651 | 3' | -49.5 | NC_006549.1 | + | 21671 | 0.67 | 0.993267 |
|
Target: 5'- aCCguagugCAuGGGA-GUGuCGUACGUGACGCc -3' miRNA: 3'- -GGa-----GUuCUCUaUAC-GCGUGCACUGUG- -5' |
|||||||
| 30651 | 3' | -49.5 | NC_006549.1 | + | 99487 | 0.69 | 0.973357 |
|
Target: 5'- uCCUCGgcGGGGGUGU-CGgGCG-GACACa -3' miRNA: 3'- -GGAGU--UCUCUAUAcGCgUGCaCUGUG- -5' |
|||||||
| 30651 | 3' | -49.5 | NC_006549.1 | + | 34221 | 0.71 | 0.933198 |
|
Target: 5'- aCCUCGAGAG---UGC-CGCGcGACGCg -3' miRNA: 3'- -GGAGUUCUCuauACGcGUGCaCUGUG- -5' |
|||||||
| 30651 | 3' | -49.5 | NC_006549.1 | + | 91951 | 0.73 | 0.889761 |
|
Target: 5'- cCCUCAAGAuGAUAcgaGCGCACGgaagccuGCGCg -3' miRNA: 3'- -GGAGUUCU-CUAUa--CGCGUGCac-----UGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home