Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30652 | 5' | -56.6 | NC_006549.1 | + | 6766 | 0.68 | 0.784065 |
Target: 5'- -uUAAGGGACCCGcggguccgcaaGgGCCCGACGGa- -3' miRNA: 3'- gcGUUCUUUGGGC-----------CgCGGGUUGCCau -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 7736 | 0.72 | 0.52297 |
Target: 5'- cCGCAAGGucCCCaGGgGCCCAGgGGg- -3' miRNA: 3'- -GCGUUCUuuGGG-CCgCGGGUUgCCau -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 21276 | 0.66 | 0.853038 |
Target: 5'- cCGCucGAccAGCgCGGCGCCCAauauaggcucggGCGGc- -3' miRNA: 3'- -GCGuuCU--UUGgGCCGCGGGU------------UGCCau -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 35621 | 0.71 | 0.614144 |
Target: 5'- cCGUGAGGGACauGGCGCCUAGCGa-- -3' miRNA: 3'- -GCGUUCUUUGggCCGCGGGUUGCcau -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 40598 | 0.67 | 0.819931 |
Target: 5'- cCGCAAGGccccCCCGG-GCCCGcCGGc- -3' miRNA: 3'- -GCGUUCUuu--GGGCCgCGGGUuGCCau -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 41736 | 0.75 | 0.352617 |
Target: 5'- gGCAAGAcugGACCCaggGGCGCCC-GCGGg- -3' miRNA: 3'- gCGUUCU---UUGGG---CCGCGGGuUGCCau -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 50878 | 0.71 | 0.603864 |
Target: 5'- gGCcuuGGGACCCaGGuUGCCCAACGGa- -3' miRNA: 3'- gCGuu-CUUUGGG-CC-GCGGGUUGCCau -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 50981 | 0.66 | 0.860826 |
Target: 5'- gGCccuAAGggGCCCauGGgGCCCuuCGGg- -3' miRNA: 3'- gCG---UUCuuUGGG--CCgCGGGuuGCCau -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 54132 | 0.69 | 0.696193 |
Target: 5'- gCGCGAGGucaGGCCC-GCGCCCGguAUGGa- -3' miRNA: 3'- -GCGUUCU---UUGGGcCGCGGGU--UGCCau -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 60487 | 0.67 | 0.828487 |
Target: 5'- -cCAAGGAucucucGCCCgaGGCGCCCGcgacggcguugGCGGUGu -3' miRNA: 3'- gcGUUCUU------UGGG--CCGCGGGU-----------UGCCAU- -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 70636 | 0.68 | 0.77473 |
Target: 5'- gCGgAAGAGGCCgUGGCGUUguGCGGUu -3' miRNA: 3'- -GCgUUCUUUGG-GCCGCGGguUGCCAu -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 82827 | 0.66 | 0.860826 |
Target: 5'- cCGCGGGAG--CCGGCGCugCCGgaGCGGg- -3' miRNA: 3'- -GCGUUCUUugGGCCGCG--GGU--UGCCau -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 91934 | 0.67 | 0.819931 |
Target: 5'- gCGCAcGGAAGCCUGcGCGCCauacCGGa- -3' miRNA: 3'- -GCGU-UCUUUGGGC-CGCGGguu-GCCau -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 106029 | 0.74 | 0.425781 |
Target: 5'- aCGgAAGGAuCCCGGCGCCCAaucaccguuuugcaAUGGUu -3' miRNA: 3'- -GCgUUCUUuGGGCCGCGGGU--------------UGCCAu -5' |
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30652 | 5' | -56.6 | NC_006549.1 | + | 124217 | 0.74 | 0.427567 |
Target: 5'- uGUAAGAAuaguuugGCCCGGaCGCCCAuuUGGUAa -3' miRNA: 3'- gCGUUCUU-------UGGGCC-GCGGGUu-GCCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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