miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30654 5' -66.1 NC_006549.1 + 122689 0.72 0.180511
Target:  5'- uCUGGCCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 122737 0.67 0.376576
Target:  5'- -cGGCCUUCgAGGaagcguccgugGCCUUCUGGUCCg -3'
miRNA:   3'- gaCCGGGGGgUCC-----------UGGAGGACCGGGg -5'
30654 5' -66.1 NC_006549.1 + 122773 0.72 0.180511
Target:  5'- uCUGGCCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 122857 0.68 0.332225
Target:  5'- uCUGGUCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 122905 0.66 0.424749
Target:  5'- -cGGCCUUCgAGGaagcguccgugGCCUUCUGGCCagCCu -3'
miRNA:   3'- gaCCGGGGGgUCC-----------UGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 122968 0.67 0.376576
Target:  5'- -cGGCCUUCgAGGaagcguccgugGCCUUCUGGUCCg -3'
miRNA:   3'- gaCCGGGGGgUCC-----------UGGAGGACCGGGg -5'
30654 5' -66.1 NC_006549.1 + 123004 0.72 0.180511
Target:  5'- uCUGGCCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 123067 0.68 0.332225
Target:  5'- uCUGGUCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 123109 0.68 0.332225
Target:  5'- uCUGGUCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 123303 0.67 0.376576
Target:  5'- -cGGCCUUCgAGGaagcguccgugGCCUUCUGGUCCg -3'
miRNA:   3'- gaCCGGGGGgUCC-----------UGGAGGACCGGGg -5'
30654 5' -66.1 NC_006549.1 + 123597 0.67 0.376576
Target:  5'- -cGGCCUUCgAGGaagcguccgugGCCUUCUGGUCCg -3'
miRNA:   3'- gaCCGGGGGgUCC-----------UGGAGGACCGGGg -5'
30654 5' -66.1 NC_006549.1 + 123786 0.66 0.424749
Target:  5'- -cGGCCUUCgAGGaagccucuguuGCCUUCUGGCCagCCu -3'
miRNA:   3'- gaCCGGGGGgUCC-----------UGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 123849 0.66 0.458834
Target:  5'- -cGGCCUUCgAGGaaGCCUCUUcGGCCUUc -3'
miRNA:   3'- gaCCGGGGGgUCC--UGGAGGA-CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 123891 0.66 0.458834
Target:  5'- -cGGCCUUCgAGGaaGCCUCUUcGGCCUUc -3'
miRNA:   3'- gaCCGGGGGgUCC--UGGAGGA-CCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.